miRNA display CGI


Results 1 - 20 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24160 3' -54.6 NC_005263.2 + 23916 0.79 0.151154
Target:  5'- cCCGCGAGCguGAC-CGUCGCUUUGGCGg -3'
miRNA:   3'- uGGCGCUUG--CUGcGCGGUGAAACUGC- -5'
24160 3' -54.6 NC_005263.2 + 42819 0.69 0.533147
Target:  5'- cGCCGCaGACGACGUaacccacuggauGCCGCUgccGGCa -3'
miRNA:   3'- -UGGCGcUUGCUGCG------------CGGUGAaa-CUGc -5'
24160 3' -54.6 NC_005263.2 + 8497 0.69 0.565602
Target:  5'- cGCCGuCGGACGAguaGuCGCCAUacgUGGCGa -3'
miRNA:   3'- -UGGC-GCUUGCUg--C-GCGGUGaa-ACUGC- -5'
24160 3' -54.6 NC_005263.2 + 46953 0.66 0.751302
Target:  5'- cGCCGCGAcgGGCGCaCUACUUUcGAgCGg -3'
miRNA:   3'- -UGGCGCUugCUGCGcGGUGAAA-CU-GC- -5'
24160 3' -54.6 NC_005263.2 + 6560 0.73 0.349324
Target:  5'- cGCCGCc-ACGGCGCGCCGCgcgUUuGCGc -3'
miRNA:   3'- -UGGCGcuUGCUGCGCGGUGa--AAcUGC- -5'
24160 3' -54.6 NC_005263.2 + 7839 0.73 0.355257
Target:  5'- aACCGCGAACGGgcggaagaucacCGCGCCccaggugcccgccgACUUcuucUGACGg -3'
miRNA:   3'- -UGGCGCUUGCU------------GCGCGG--------------UGAA----ACUGC- -5'
24160 3' -54.6 NC_005263.2 + 21188 0.72 0.366461
Target:  5'- -aCGCGGACG-CGCGCgGCgcgGGCGa -3'
miRNA:   3'- ugGCGCUUGCuGCGCGgUGaaaCUGC- -5'
24160 3' -54.6 NC_005263.2 + 30603 0.71 0.42891
Target:  5'- cGCCGCcuGAucgauCGACGCGCCGCgcgcgaucagGGCGu -3'
miRNA:   3'- -UGGCG--CUu----GCUGCGCGGUGaaa-------CUGC- -5'
24160 3' -54.6 NC_005263.2 + 9028 0.7 0.490976
Target:  5'- uGCCGCGcGACGGCGaGCCgGCUacGACGu -3'
miRNA:   3'- -UGGCGC-UUGCUGCgCGG-UGAaaCUGC- -5'
24160 3' -54.6 NC_005263.2 + 20739 0.69 0.522473
Target:  5'- gGCCGC---CGcCGCGCCGCUcgcUGGCGg -3'
miRNA:   3'- -UGGCGcuuGCuGCGCGGUGAa--ACUGC- -5'
24160 3' -54.6 NC_005263.2 + 17813 0.7 0.501381
Target:  5'- gGCCGCGccCGGCGCuGUCGCg--GACa -3'
miRNA:   3'- -UGGCGCuuGCUGCG-CGGUGaaaCUGc -5'
24160 3' -54.6 NC_005263.2 + 29353 0.7 0.480672
Target:  5'- cACCGCGccgccuACGAuCGCGCCGaucUGGCGc -3'
miRNA:   3'- -UGGCGCu-----UGCU-GCGCGGUgaaACUGC- -5'
24160 3' -54.6 NC_005263.2 + 20044 0.75 0.258711
Target:  5'- uGCCGCGcguugaguGCGACGCGCUGCUaacUGAUGc -3'
miRNA:   3'- -UGGCGCu-------UGCUGCGCGGUGAa--ACUGC- -5'
24160 3' -54.6 NC_005263.2 + 16720 0.7 0.511882
Target:  5'- gGCCGCGAGCgGugGCGCaAUUgcccGGCGu -3'
miRNA:   3'- -UGGCGCUUG-CugCGCGgUGAaa--CUGC- -5'
24160 3' -54.6 NC_005263.2 + 17898 0.74 0.309023
Target:  5'- uACCGUGAACGGCGCGCagauc-GGCGc -3'
miRNA:   3'- -UGGCGCUUGCUGCGCGgugaaaCUGC- -5'
24160 3' -54.6 NC_005263.2 + 14134 0.71 0.440567
Target:  5'- aGCCGC-AGCGgccaGCGCgGCCGCcUUGGCGa -3'
miRNA:   3'- -UGGCGcUUGC----UGCG-CGGUGaAACUGC- -5'
24160 3' -54.6 NC_005263.2 + 46661 0.7 0.511882
Target:  5'- cGCCGCGAGCGccgcgaagccucGCGCGCaGCcaaGGCGg -3'
miRNA:   3'- -UGGCGCUUGC------------UGCGCGgUGaaaCUGC- -5'
24160 3' -54.6 NC_005263.2 + 29055 0.69 0.554719
Target:  5'- gGCCGC--GCGGCGCGUC-CUcggGGCGg -3'
miRNA:   3'- -UGGCGcuUGCUGCGCGGuGAaa-CUGC- -5'
24160 3' -54.6 NC_005263.2 + 9559 0.73 0.332766
Target:  5'- cGCuCGCGGcuugccagGCGGCGCGCuCGCUgcccUUGGCGa -3'
miRNA:   3'- -UG-GCGCU--------UGCUGCGCG-GUGA----AACUGC- -5'
24160 3' -54.6 NC_005263.2 + 31744 0.73 0.357821
Target:  5'- cGCCGcCGAGCGACGCGgCCGCgcgcuuCGu -3'
miRNA:   3'- -UGGC-GCUUGCUGCGC-GGUGaaacu-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.