miRNA display CGI


Results 1 - 20 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24160 3' -54.6 NC_005263.2 + 30166 1.08 0.001243
Target:  5'- gACCGCGAACGACGCGCCACUUUGACGu -3'
miRNA:   3'- -UGGCGCUUGCUGCGCGGUGAAACUGC- -5'
24160 3' -54.6 NC_005263.2 + 27455 0.81 0.110993
Target:  5'- gGCCGCGAcgaGCGGCGCGgCCACUgcGGCc -3'
miRNA:   3'- -UGGCGCU---UGCUGCGC-GGUGAaaCUGc -5'
24160 3' -54.6 NC_005263.2 + 22400 0.8 0.114187
Target:  5'- gGCCGCGAACGuACGCGCCGCcgUG-Cu -3'
miRNA:   3'- -UGGCGCUUGC-UGCGCGGUGaaACuGc -5'
24160 3' -54.6 NC_005263.2 + 23916 0.79 0.151154
Target:  5'- cCCGCGAGCguGAC-CGUCGCUUUGGCGg -3'
miRNA:   3'- uGGCGCUUG--CUGcGCGGUGAAACUGC- -5'
24160 3' -54.6 NC_005263.2 + 34148 0.76 0.233084
Target:  5'- cCCGCGAACGuCGCGCCGCguccuauGCGc -3'
miRNA:   3'- uGGCGCUUGCuGCGCGGUGaaac---UGC- -5'
24160 3' -54.6 NC_005263.2 + 20044 0.75 0.258711
Target:  5'- uGCCGCGcguugaguGCGACGCGCUGCUaacUGAUGc -3'
miRNA:   3'- -UGGCGCu-------UGCUGCGCGGUGAa--ACUGC- -5'
24160 3' -54.6 NC_005263.2 + 17898 0.74 0.309023
Target:  5'- uACCGUGAACGGCGCGCagauc-GGCGc -3'
miRNA:   3'- -UGGCGCUUGCUGCGCGgugaaaCUGC- -5'
24160 3' -54.6 NC_005263.2 + 18867 0.73 0.316791
Target:  5'- -aCGCGugccuCGGCGCGCCGCUgcgcgccGACGg -3'
miRNA:   3'- ugGCGCuu---GCUGCGCGGUGAaa-----CUGC- -5'
24160 3' -54.6 NC_005263.2 + 26315 0.73 0.331953
Target:  5'- gAUCGCGGGCGAugcgcgagugauuCGCGCCACUcgUG-CGg -3'
miRNA:   3'- -UGGCGCUUGCU-------------GCGCGGUGAa-ACuGC- -5'
24160 3' -54.6 NC_005263.2 + 9559 0.73 0.332766
Target:  5'- cGCuCGCGGcuugccagGCGGCGCGCuCGCUgcccUUGGCGa -3'
miRNA:   3'- -UG-GCGCU--------UGCUGCGCG-GUGA----AACUGC- -5'
24160 3' -54.6 NC_005263.2 + 2118 0.73 0.340973
Target:  5'- cGCCGUucaGAAUG-CGCGCCACUUUGuCc -3'
miRNA:   3'- -UGGCG---CUUGCuGCGCGGUGAAACuGc -5'
24160 3' -54.6 NC_005263.2 + 6560 0.73 0.349324
Target:  5'- cGCCGCc-ACGGCGCGCCGCgcgUUuGCGc -3'
miRNA:   3'- -UGGCGcuUGCUGCGCGGUGa--AAcUGC- -5'
24160 3' -54.6 NC_005263.2 + 7839 0.73 0.355257
Target:  5'- aACCGCGAACGGgcggaagaucacCGCGCCccaggugcccgccgACUUcuucUGACGg -3'
miRNA:   3'- -UGGCGCUUGCU------------GCGCGG--------------UGAA----ACUGC- -5'
24160 3' -54.6 NC_005263.2 + 31744 0.73 0.357821
Target:  5'- cGCCGcCGAGCGACGCGgCCGCgcgcuuCGu -3'
miRNA:   3'- -UGGC-GCUUGCUGCGC-GGUGaaacu-GC- -5'
24160 3' -54.6 NC_005263.2 + 21188 0.72 0.366461
Target:  5'- -aCGCGGACG-CGCGCgGCgcgGGCGa -3'
miRNA:   3'- ugGCGCUUGCuGCGCGgUGaaaCUGC- -5'
24160 3' -54.6 NC_005263.2 + 11746 0.71 0.411771
Target:  5'- aACCGUaGGCGACGCGacaccuggcgaCCACUcgGGCGg -3'
miRNA:   3'- -UGGCGcUUGCUGCGC-----------GGUGAaaCUGC- -5'
24160 3' -54.6 NC_005263.2 + 14949 0.71 0.42124
Target:  5'- gUCGCGAugcaagGCGcCGCGCCAUggcUGGCGg -3'
miRNA:   3'- uGGCGCU------UGCuGCGCGGUGaa-ACUGC- -5'
24160 3' -54.6 NC_005263.2 + 16608 0.71 0.42124
Target:  5'- cGCgCGCGAGCagcagcuCGCGCCGCU--GACGg -3'
miRNA:   3'- -UG-GCGCUUGcu-----GCGCGGUGAaaCUGC- -5'
24160 3' -54.6 NC_005263.2 + 30603 0.71 0.42891
Target:  5'- cGCCGCcuGAucgauCGACGCGCCGCgcgcgaucagGGCGu -3'
miRNA:   3'- -UGGCG--CUu----GCUGCGCGGUGaaa-------CUGC- -5'
24160 3' -54.6 NC_005263.2 + 27367 0.71 0.43084
Target:  5'- cGCCaGCGAGCGGCGCgGCgGCggccGGCGc -3'
miRNA:   3'- -UGG-CGCUUGCUGCG-CGgUGaaa-CUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.