Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24166 | 5' | -54.4 | NC_005263.2 | + | 268 | 0.66 | 0.760678 |
Target: 5'- gGUCGUCAcgccaccgagcacggUCACgGUcgaCGUCUGCGg -3' miRNA: 3'- gCGGCAGU---------------AGUGgCGuaaGCAGACGC- -5' |
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24166 | 5' | -54.4 | NC_005263.2 | + | 20962 | 0.66 | 0.756535 |
Target: 5'- gCGCUGUCGgacaUCGCCGacg-CGgCUGCGc -3' miRNA: 3'- -GCGGCAGU----AGUGGCguaaGCaGACGC- -5' |
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24166 | 5' | -54.4 | NC_005263.2 | + | 46087 | 0.66 | 0.746088 |
Target: 5'- gCGCCGUUAUgCGCCGCug-CGgauuugGCGc -3' miRNA: 3'- -GCGGCAGUA-GUGGCGuaaGCaga---CGC- -5' |
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24166 | 5' | -54.4 | NC_005263.2 | + | 4915 | 0.66 | 0.736584 |
Target: 5'- gCGCCGUCGccauccaaaacaucgCGCCGUAcugCGUCUGg- -3' miRNA: 3'- -GCGGCAGUa--------------GUGGCGUaa-GCAGACgc -5' |
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24166 | 5' | -54.4 | NC_005263.2 | + | 18600 | 0.66 | 0.735523 |
Target: 5'- gCGCCGaCGgaCGCCGCAgcggCGUUcGCGg -3' miRNA: 3'- -GCGGCaGUa-GUGGCGUaa--GCAGaCGC- -5' |
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24166 | 5' | -54.4 | NC_005263.2 | + | 21849 | 0.66 | 0.735523 |
Target: 5'- gGCUGaUCAggUCGCCGCGUUCG-CgacgGCc -3' miRNA: 3'- gCGGC-AGU--AGUGGCGUAAGCaGa---CGc -5' |
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24166 | 5' | -54.4 | NC_005263.2 | + | 1416 | 0.66 | 0.735523 |
Target: 5'- uGUCGUCGgcgcgCGCCGCcUUgG-CUGCGc -3' miRNA: 3'- gCGGCAGUa----GUGGCGuAAgCaGACGC- -5' |
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24166 | 5' | -54.4 | NC_005263.2 | + | 21566 | 0.66 | 0.735523 |
Target: 5'- gGCCGUUccagCGCCGCGUgcUCGcCgccgGCGu -3' miRNA: 3'- gCGGCAGua--GUGGCGUA--AGCaGa---CGC- -5' |
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24166 | 5' | -54.4 | NC_005263.2 | + | 12649 | 0.66 | 0.724852 |
Target: 5'- aCGCCGUCGaUAUCGUcgUCGgccgGCGc -3' miRNA: 3'- -GCGGCAGUaGUGGCGuaAGCaga-CGC- -5' |
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24166 | 5' | -54.4 | NC_005263.2 | + | 12604 | 0.66 | 0.724852 |
Target: 5'- gCGCCaGU-GUCACCGCcUUCGgccaUGCGc -3' miRNA: 3'- -GCGG-CAgUAGUGGCGuAAGCag--ACGC- -5' |
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24166 | 5' | -54.4 | NC_005263.2 | + | 1903 | 0.66 | 0.714087 |
Target: 5'- uGCCGaUCAggaaguaccaGCCGCg--CGUCUGCa -3' miRNA: 3'- gCGGC-AGUag--------UGGCGuaaGCAGACGc -5' |
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24166 | 5' | -54.4 | NC_005263.2 | + | 47325 | 0.66 | 0.714087 |
Target: 5'- uGCCGaCGUCGacCCGCAgUCGUacaucgcgCUGCGc -3' miRNA: 3'- gCGGCaGUAGU--GGCGUaAGCA--------GACGC- -5' |
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24166 | 5' | -54.4 | NC_005263.2 | + | 3395 | 0.67 | 0.681345 |
Target: 5'- uCGCCGUCGUUGCgGgCAcUUCGguaaagaacugCUGCGg -3' miRNA: 3'- -GCGGCAGUAGUGgC-GU-AAGCa----------GACGC- -5' |
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24166 | 5' | -54.4 | NC_005263.2 | + | 42091 | 0.67 | 0.681345 |
Target: 5'- uCGaCCGaaCGUUAuCCGCGUUCGgugCUGCGc -3' miRNA: 3'- -GC-GGCa-GUAGU-GGCGUAAGCa--GACGC- -5' |
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24166 | 5' | -54.4 | NC_005263.2 | + | 20191 | 0.67 | 0.67032 |
Target: 5'- gCGCCGggCGacgCGCCGCcgUCGagUGCu -3' miRNA: 3'- -GCGGCa-GUa--GUGGCGuaAGCagACGc -5' |
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24166 | 5' | -54.4 | NC_005263.2 | + | 37433 | 0.67 | 0.67032 |
Target: 5'- uCGUCGUCAuacgUCGgCGCGcgCGgUCUGCGc -3' miRNA: 3'- -GCGGCAGU----AGUgGCGUaaGC-AGACGC- -5' |
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24166 | 5' | -54.4 | NC_005263.2 | + | 31639 | 0.67 | 0.67032 |
Target: 5'- gCGCCGUCu---CgGUGUUCGUCagUGCGa -3' miRNA: 3'- -GCGGCAGuaguGgCGUAAGCAG--ACGC- -5' |
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24166 | 5' | -54.4 | NC_005263.2 | + | 20659 | 0.68 | 0.625964 |
Target: 5'- gCGCCGcUCGUCGCgGCcgUCGaaagcguguUCgGCGg -3' miRNA: 3'- -GCGGC-AGUAGUGgCGuaAGC---------AGaCGC- -5' |
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24166 | 5' | -54.4 | NC_005263.2 | + | 20321 | 0.68 | 0.625964 |
Target: 5'- cCGCCGUCccgacgAUCACCGC---UGUCgGCa -3' miRNA: 3'- -GCGGCAG------UAGUGGCGuaaGCAGaCGc -5' |
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24166 | 5' | -54.4 | NC_005263.2 | + | 36101 | 0.68 | 0.603777 |
Target: 5'- gCGCCGUCGcguugaUgGCCGCGU-CGUacUUGCGc -3' miRNA: 3'- -GCGGCAGU------AgUGGCGUAaGCA--GACGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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