Results 1 - 20 of 276 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24173 | 5' | -59.4 | NC_005263.2 | + | 164 | 0.66 | 0.513548 |
Target: 5'- aGCaCGCGAuccgcgcccgggGCGaGCcCGCUGCCcGUGCg -3' miRNA: 3'- cCG-GCGCU------------UGCaUGcGCGGCGG-CACG- -5' |
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24173 | 5' | -59.4 | NC_005263.2 | + | 441 | 0.66 | 0.477555 |
Target: 5'- cGGCaguGCGGaacgcaaucuucacgGCGUuuGUGCCGCCGcccGCg -3' miRNA: 3'- -CCGg--CGCU---------------UGCAugCGCGGCGGCa--CG- -5' |
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24173 | 5' | -59.4 | NC_005263.2 | + | 445 | 0.66 | 0.48347 |
Target: 5'- cGCCGCG-ACGUAauagaGCcCCGCUGacGCg -3' miRNA: 3'- cCGGCGCuUGCAUg----CGcGGCGGCa-CG- -5' |
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24173 | 5' | -59.4 | NC_005263.2 | + | 661 | 0.67 | 0.454265 |
Target: 5'- cGGCCagauCGAACGccucaucguaGCGCGCCuuGCCGaGCg -3' miRNA: 3'- -CCGGc---GCUUGCa---------UGCGCGG--CGGCaCG- -5' |
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24173 | 5' | -59.4 | NC_005263.2 | + | 693 | 0.69 | 0.348028 |
Target: 5'- cGGUgagCGCGAuCGUGC-CGCCGCCc-GCg -3' miRNA: 3'- -CCG---GCGCUuGCAUGcGCGGCGGcaCG- -5' |
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24173 | 5' | -59.4 | NC_005263.2 | + | 732 | 0.66 | 0.513548 |
Target: 5'- uGCuCGCGcgcauCGaACGCGCCGCCcauuucgGCg -3' miRNA: 3'- cCG-GCGCuu---GCaUGCGCGGCGGca-----CG- -5' |
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24173 | 5' | -59.4 | NC_005263.2 | + | 880 | 0.69 | 0.324392 |
Target: 5'- cGGCCgGCGcuucguucAGCGcgGCGguCGCCGCCG-GCg -3' miRNA: 3'- -CCGG-CGC--------UUGCa-UGC--GCGGCGGCaCG- -5' |
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24173 | 5' | -59.4 | NC_005263.2 | + | 951 | 0.68 | 0.406919 |
Target: 5'- -cCCGCGAGCGgcgACGUagcggcgGUCGCC-UGCg -3' miRNA: 3'- ccGGCGCUUGCa--UGCG-------CGGCGGcACG- -5' |
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24173 | 5' | -59.4 | NC_005263.2 | + | 1097 | 0.68 | 0.406919 |
Target: 5'- uGCCGCaGGuucAUGUugcagucGCGCGCgaaguccgCGCCGUGCu -3' miRNA: 3'- cCGGCG-CU---UGCA-------UGCGCG--------GCGGCACG- -5' |
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24173 | 5' | -59.4 | NC_005263.2 | + | 1287 | 0.66 | 0.473632 |
Target: 5'- uGGCgCGCGuuGCGuUACGCGaUCGgCGUGa -3' miRNA: 3'- -CCG-GCGCu-UGC-AUGCGC-GGCgGCACg -5' |
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24173 | 5' | -59.4 | NC_005263.2 | + | 1855 | 0.69 | 0.356176 |
Target: 5'- aGGCCgGCGAcguGCGguucugGCGCGCCuggcCCGgauugGCg -3' miRNA: 3'- -CCGG-CGCU---UGCa-----UGCGCGGc---GGCa----CG- -5' |
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24173 | 5' | -59.4 | NC_005263.2 | + | 1921 | 0.69 | 0.316782 |
Target: 5'- aGCCGCGcgucugcACGaGCGCGCCGgcaCCG-GCg -3' miRNA: 3'- cCGGCGCu------UGCaUGCGCGGC---GGCaCG- -5' |
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24173 | 5' | -59.4 | NC_005263.2 | + | 2230 | 0.85 | 0.027684 |
Target: 5'- cGCCGCGuucGCGUACGCGCCGauguaCGUGUa -3' miRNA: 3'- cCGGCGCu--UGCAUGCGCGGCg----GCACG- -5' |
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24173 | 5' | -59.4 | NC_005263.2 | + | 2284 | 0.67 | 0.426043 |
Target: 5'- cGCCGuCGGcagguCGUGCGcCGUgGCCG-GCa -3' miRNA: 3'- cCGGC-GCUu----GCAUGC-GCGgCGGCaCG- -5' |
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24173 | 5' | -59.4 | NC_005263.2 | + | 2330 | 0.68 | 0.37287 |
Target: 5'- uGGCggaaCGCGAGCac-CGUGCgGCCGUuGCg -3' miRNA: 3'- -CCG----GCGCUUGcauGCGCGgCGGCA-CG- -5' |
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24173 | 5' | -59.4 | NC_005263.2 | + | 2556 | 0.69 | 0.352901 |
Target: 5'- aGGCCGCGAACGcgagACGaucggcaaucacgGCCGUCcagGCa -3' miRNA: 3'- -CCGGCGCUUGCa---UGCg------------CGGCGGca-CG- -5' |
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24173 | 5' | -59.4 | NC_005263.2 | + | 2627 | 0.66 | 0.513548 |
Target: 5'- aGGCCGacCGcGCGguucauCGCGCuUGCCG-GCg -3' miRNA: 3'- -CCGGC--GCuUGCau----GCGCG-GCGGCaCG- -5' |
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24173 | 5' | -59.4 | NC_005263.2 | + | 2664 | 0.68 | 0.37287 |
Target: 5'- cGGCgGCGAcaccggcagccuGCaGUGuCGCGCCGgCG-GCg -3' miRNA: 3'- -CCGgCGCU------------UG-CAU-GCGCGGCgGCaCG- -5' |
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24173 | 5' | -59.4 | NC_005263.2 | + | 2700 | 0.66 | 0.473632 |
Target: 5'- cGGCCGCucggcAgGUGCauGCGCagCGCgCGUGCa -3' miRNA: 3'- -CCGGCGcu---UgCAUG--CGCG--GCG-GCACG- -5' |
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24173 | 5' | -59.4 | NC_005263.2 | + | 2749 | 0.68 | 0.381414 |
Target: 5'- aGCCGaGAu----CGCgGCCGCCGUGCc -3' miRNA: 3'- cCGGCgCUugcauGCG-CGGCGGCACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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