miRNA display CGI


Results 1 - 20 of 276 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24173 5' -59.4 NC_005263.2 + 2230 0.85 0.027684
Target:  5'- cGCCGCGuucGCGUACGCGCCGauguaCGUGUa -3'
miRNA:   3'- cCGGCGCu--UGCAUGCGCGGCg----GCACG- -5'
24173 5' -59.4 NC_005263.2 + 20556 0.74 0.164178
Target:  5'- cGCCGCGAcgcuCGUGCccgGCcuGCCgGCCGUGCc -3'
miRNA:   3'- cCGGCGCUu---GCAUG---CG--CGG-CGGCACG- -5'
24173 5' -59.4 NC_005263.2 + 29054 0.73 0.173074
Target:  5'- aGGCCGCGcggcGCGUccucggggcgGCGCGCaucgGCCGUcGCu -3'
miRNA:   3'- -CCGGCGCu---UGCA----------UGCGCGg---CGGCA-CG- -5'
24173 5' -59.4 NC_005263.2 + 8466 0.65 0.522722
Target:  5'- cGuuGCGGguaguugAUGUuCGUGCCGCUGUcGCc -3'
miRNA:   3'- cCggCGCU-------UGCAuGCGCGGCGGCA-CG- -5'
24173 5' -59.4 NC_005263.2 + 12554 0.78 0.087984
Target:  5'- cGGCCgGCGGcgcCGUagcgcccgcccGCGCGCCGCCGgGCg -3'
miRNA:   3'- -CCGG-CGCUu--GCA-----------UGCGCGGCGGCaCG- -5'
24173 5' -59.4 NC_005263.2 + 25904 0.77 0.09558
Target:  5'- cGGCCGCGAcguACGUAacgguCGCGuuGCCGgucgucGCa -3'
miRNA:   3'- -CCGGCGCU---UGCAU-----GCGCggCGGCa-----CG- -5'
24173 5' -59.4 NC_005263.2 + 19119 0.77 0.1021
Target:  5'- cGGCCGCGccgagcgcaucgccgGGCGcuUGCGCGUCGUCGUGa -3'
miRNA:   3'- -CCGGCGC---------------UUGC--AUGCGCGGCGGCACg -5'
24173 5' -59.4 NC_005263.2 + 20984 0.76 0.106677
Target:  5'- cGGCUGCGcGCcUGCGCGUCGaCGUGCc -3'
miRNA:   3'- -CCGGCGCuUGcAUGCGCGGCgGCACG- -5'
24173 5' -59.4 NC_005263.2 + 2904 0.75 0.132582
Target:  5'- uGGCCGa-GACGUGCuGCGCgGCCGUcGUa -3'
miRNA:   3'- -CCGGCgcUUGCAUG-CGCGgCGGCA-CG- -5'
24173 5' -59.4 NC_005263.2 + 28708 0.74 0.159886
Target:  5'- cGCgCGCGuugcCGUacuGCGCGCCGCCGagGCu -3'
miRNA:   3'- cCG-GCGCuu--GCA---UGCGCGGCGGCa-CG- -5'
24173 5' -59.4 NC_005263.2 + 38012 0.75 0.139912
Target:  5'- cGGUCGCGAACauucucgACGCGCUGCCc-GCg -3'
miRNA:   3'- -CCGGCGCUUGca-----UGCGCGGCGGcaCG- -5'
24173 5' -59.4 NC_005263.2 + 20188 0.76 0.12225
Target:  5'- aGCgCGcCGGGCG-ACGCGCCGCCGUcgaguGCu -3'
miRNA:   3'- cCG-GC-GCUUGCaUGCGCGGCGGCA-----CG- -5'
24173 5' -59.4 NC_005263.2 + 27230 0.81 0.046194
Target:  5'- cGCuCGUGAGCGUGauCGCGCCGCCG-GCc -3'
miRNA:   3'- cCG-GCGCUUGCAU--GCGCGGCGGCaCG- -5'
24173 5' -59.4 NC_005263.2 + 30199 0.75 0.143715
Target:  5'- gGGCCGUuGAUGcugaucgGCGCGCCGCCG-GUc -3'
miRNA:   3'- -CCGGCGcUUGCa------UGCGCGGCGGCaCG- -5'
24173 5' -59.4 NC_005263.2 + 4844 0.81 0.050282
Target:  5'- cGGuuGCc--CGUACGCGCgCGCCGUGCc -3'
miRNA:   3'- -CCggCGcuuGCAUGCGCG-GCGGCACG- -5'
24173 5' -59.4 NC_005263.2 + 23404 0.76 0.109634
Target:  5'- cGCCGCccGGcACGUucgGCGCGCCGCCGUuaccgGCg -3'
miRNA:   3'- cCGGCG--CU-UGCA---UGCGCGGCGGCA-----CG- -5'
24173 5' -59.4 NC_005263.2 + 17185 0.74 0.147612
Target:  5'- aGCuCGCG-GCGUACGcCGUCGCCGcGCu -3'
miRNA:   3'- cCG-GCGCuUGCAUGC-GCGGCGGCaCG- -5'
24173 5' -59.4 NC_005263.2 + 23293 0.74 0.168574
Target:  5'- cGGCCGUauaGGcCGaaUACGCGCCGCCGacGCc -3'
miRNA:   3'- -CCGGCG---CUuGC--AUGCGCGGCGGCa-CG- -5'
24173 5' -59.4 NC_005263.2 + 19073 0.8 0.062978
Target:  5'- aGGCCGCGcgucaGUACgGCGUCGCgGUGCg -3'
miRNA:   3'- -CCGGCGCuug--CAUG-CGCGGCGgCACG- -5'
24173 5' -59.4 NC_005263.2 + 20414 0.77 0.098247
Target:  5'- cGGCCGCcGGCGccgGCGCGCacaagaaggcgGCCGUGCu -3'
miRNA:   3'- -CCGGCGcUUGCa--UGCGCGg----------CGGCACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.