miRNA display CGI


Results 1 - 20 of 276 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24173 5' -59.4 NC_005263.2 + 22399 1.13 0.000216
Target:  5'- aGGCCGCGAACGUACGCGCCGCCGUGCu -3'
miRNA:   3'- -CCGGCGCUUGCAUGCGCGGCGGCACG- -5'
24173 5' -59.4 NC_005263.2 + 3316 0.87 0.017008
Target:  5'- cGGCCGCGcgguguucAACGUcuGCGCGCCGCCG-GCg -3'
miRNA:   3'- -CCGGCGC--------UUGCA--UGCGCGGCGGCaCG- -5'
24173 5' -59.4 NC_005263.2 + 2230 0.85 0.027684
Target:  5'- cGCCGCGuucGCGUACGCGCCGauguaCGUGUa -3'
miRNA:   3'- cCGGCGCu--UGCAUGCGCGGCg----GCACG- -5'
24173 5' -59.4 NC_005263.2 + 18799 0.84 0.031032
Target:  5'- cGCCGCGcGCGaUGCGCaugccgacccgGCCGCCGUGCa -3'
miRNA:   3'- cCGGCGCuUGC-AUGCG-----------CGGCGGCACG- -5'
24173 5' -59.4 NC_005263.2 + 27230 0.81 0.046194
Target:  5'- cGCuCGUGAGCGUGauCGCGCCGCCG-GCc -3'
miRNA:   3'- cCG-GCGCUUGCAU--GCGCGGCGGCaCG- -5'
24173 5' -59.4 NC_005263.2 + 32718 0.81 0.047118
Target:  5'- cGCCGUGcggaucgccaaugcAACGUACGCGCUGCCGcuUGCg -3'
miRNA:   3'- cCGGCGC--------------UUGCAUGCGCGGCGGC--ACG- -5'
24173 5' -59.4 NC_005263.2 + 4844 0.81 0.050282
Target:  5'- cGGuuGCc--CGUACGCGCgCGCCGUGCc -3'
miRNA:   3'- -CCggCGcuuGCAUGCGCG-GCGGCACG- -5'
24173 5' -59.4 NC_005263.2 + 19073 0.8 0.062978
Target:  5'- aGGCCGCGcgucaGUACgGCGUCGCgGUGCg -3'
miRNA:   3'- -CCGGCGCuug--CAUG-CGCGGCGgCACG- -5'
24173 5' -59.4 NC_005263.2 + 35543 0.79 0.066608
Target:  5'- cGGCgCGCGGGCGggcgcUACgGCGCCGCCG-GCc -3'
miRNA:   3'- -CCG-GCGCUUGC-----AUG-CGCGGCGGCaCG- -5'
24173 5' -59.4 NC_005263.2 + 28235 0.78 0.083242
Target:  5'- cGGCCGCGcuCGc-CGCGCuCGCCGUGa -3'
miRNA:   3'- -CCGGCGCuuGCauGCGCG-GCGGCACg -5'
24173 5' -59.4 NC_005263.2 + 12554 0.78 0.087984
Target:  5'- cGGCCgGCGGcgcCGUagcgcccgcccGCGCGCCGCCGgGCg -3'
miRNA:   3'- -CCGG-CGCUu--GCA-----------UGCGCGGCGGCaCG- -5'
24173 5' -59.4 NC_005263.2 + 37923 0.77 0.092981
Target:  5'- ---aGCGGGCGcagGCGCGCCGCCG-GCa -3'
miRNA:   3'- ccggCGCUUGCa--UGCGCGGCGGCaCG- -5'
24173 5' -59.4 NC_005263.2 + 25904 0.77 0.09558
Target:  5'- cGGCCGCGAcguACGUAacgguCGCGuuGCCGgucgucGCa -3'
miRNA:   3'- -CCGGCGCU---UGCAU-----GCGCggCGGCa-----CG- -5'
24173 5' -59.4 NC_005263.2 + 20414 0.77 0.098247
Target:  5'- cGGCCGCcGGCGccgGCGCGCacaagaaggcgGCCGUGCu -3'
miRNA:   3'- -CCGGCGcUUGCa--UGCGCGg----------CGGCACG- -5'
24173 5' -59.4 NC_005263.2 + 19119 0.77 0.1021
Target:  5'- cGGCCGCGccgagcgcaucgccgGGCGcuUGCGCGUCGUCGUGa -3'
miRNA:   3'- -CCGGCGC---------------UUGC--AUGCGCGGCGGCACg -5'
24173 5' -59.4 NC_005263.2 + 27682 0.76 0.106677
Target:  5'- cGGCCGCcuucuUGUGCGCGCCggcGCCG-GCg -3'
miRNA:   3'- -CCGGCGcuu--GCAUGCGCGG---CGGCaCG- -5'
24173 5' -59.4 NC_005263.2 + 20984 0.76 0.106677
Target:  5'- cGGCUGCGcGCcUGCGCGUCGaCGUGCc -3'
miRNA:   3'- -CCGGCGCuUGcAUGCGCGGCgGCACG- -5'
24173 5' -59.4 NC_005263.2 + 23404 0.76 0.109634
Target:  5'- cGCCGCccGGcACGUucgGCGCGCCGCCGUuaccgGCg -3'
miRNA:   3'- cCGGCG--CU-UGCA---UGCGCGGCGGCA-----CG- -5'
24173 5' -59.4 NC_005263.2 + 38562 0.76 0.115782
Target:  5'- aGCCGCGAGCGccGCGUcggucGCUGCCGcGCa -3'
miRNA:   3'- cCGGCGCUUGCa-UGCG-----CGGCGGCaCG- -5'
24173 5' -59.4 NC_005263.2 + 3974 0.76 0.12225
Target:  5'- aGGCCGUuguAACGgGCGcCGCCGCCGaGCa -3'
miRNA:   3'- -CCGGCGc--UUGCaUGC-GCGGCGGCaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.