miRNA display CGI


Results 1 - 20 of 276 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24173 5' -59.4 NC_005263.2 + 164 0.66 0.513548
Target:  5'- aGCaCGCGAuccgcgcccgggGCGaGCcCGCUGCCcGUGCg -3'
miRNA:   3'- cCG-GCGCU------------UGCaUGcGCGGCGG-CACG- -5'
24173 5' -59.4 NC_005263.2 + 441 0.66 0.477555
Target:  5'- cGGCaguGCGGaacgcaaucuucacgGCGUuuGUGCCGCCGcccGCg -3'
miRNA:   3'- -CCGg--CGCU---------------UGCAugCGCGGCGGCa--CG- -5'
24173 5' -59.4 NC_005263.2 + 445 0.66 0.48347
Target:  5'- cGCCGCG-ACGUAauagaGCcCCGCUGacGCg -3'
miRNA:   3'- cCGGCGCuUGCAUg----CGcGGCGGCa-CG- -5'
24173 5' -59.4 NC_005263.2 + 661 0.67 0.454265
Target:  5'- cGGCCagauCGAACGccucaucguaGCGCGCCuuGCCGaGCg -3'
miRNA:   3'- -CCGGc---GCUUGCa---------UGCGCGG--CGGCaCG- -5'
24173 5' -59.4 NC_005263.2 + 693 0.69 0.348028
Target:  5'- cGGUgagCGCGAuCGUGC-CGCCGCCc-GCg -3'
miRNA:   3'- -CCG---GCGCUuGCAUGcGCGGCGGcaCG- -5'
24173 5' -59.4 NC_005263.2 + 732 0.66 0.513548
Target:  5'- uGCuCGCGcgcauCGaACGCGCCGCCcauuucgGCg -3'
miRNA:   3'- cCG-GCGCuu---GCaUGCGCGGCGGca-----CG- -5'
24173 5' -59.4 NC_005263.2 + 880 0.69 0.324392
Target:  5'- cGGCCgGCGcuucguucAGCGcgGCGguCGCCGCCG-GCg -3'
miRNA:   3'- -CCGG-CGC--------UUGCa-UGC--GCGGCGGCaCG- -5'
24173 5' -59.4 NC_005263.2 + 951 0.68 0.406919
Target:  5'- -cCCGCGAGCGgcgACGUagcggcgGUCGCC-UGCg -3'
miRNA:   3'- ccGGCGCUUGCa--UGCG-------CGGCGGcACG- -5'
24173 5' -59.4 NC_005263.2 + 1097 0.68 0.406919
Target:  5'- uGCCGCaGGuucAUGUugcagucGCGCGCgaaguccgCGCCGUGCu -3'
miRNA:   3'- cCGGCG-CU---UGCA-------UGCGCG--------GCGGCACG- -5'
24173 5' -59.4 NC_005263.2 + 1287 0.66 0.473632
Target:  5'- uGGCgCGCGuuGCGuUACGCGaUCGgCGUGa -3'
miRNA:   3'- -CCG-GCGCu-UGC-AUGCGC-GGCgGCACg -5'
24173 5' -59.4 NC_005263.2 + 1855 0.69 0.356176
Target:  5'- aGGCCgGCGAcguGCGguucugGCGCGCCuggcCCGgauugGCg -3'
miRNA:   3'- -CCGG-CGCU---UGCa-----UGCGCGGc---GGCa----CG- -5'
24173 5' -59.4 NC_005263.2 + 1921 0.69 0.316782
Target:  5'- aGCCGCGcgucugcACGaGCGCGCCGgcaCCG-GCg -3'
miRNA:   3'- cCGGCGCu------UGCaUGCGCGGC---GGCaCG- -5'
24173 5' -59.4 NC_005263.2 + 2230 0.85 0.027684
Target:  5'- cGCCGCGuucGCGUACGCGCCGauguaCGUGUa -3'
miRNA:   3'- cCGGCGCu--UGCAUGCGCGGCg----GCACG- -5'
24173 5' -59.4 NC_005263.2 + 2284 0.67 0.426043
Target:  5'- cGCCGuCGGcagguCGUGCGcCGUgGCCG-GCa -3'
miRNA:   3'- cCGGC-GCUu----GCAUGC-GCGgCGGCaCG- -5'
24173 5' -59.4 NC_005263.2 + 2330 0.68 0.37287
Target:  5'- uGGCggaaCGCGAGCac-CGUGCgGCCGUuGCg -3'
miRNA:   3'- -CCG----GCGCUUGcauGCGCGgCGGCA-CG- -5'
24173 5' -59.4 NC_005263.2 + 2556 0.69 0.352901
Target:  5'- aGGCCGCGAACGcgagACGaucggcaaucacgGCCGUCcagGCa -3'
miRNA:   3'- -CCGGCGCUUGCa---UGCg------------CGGCGGca-CG- -5'
24173 5' -59.4 NC_005263.2 + 2627 0.66 0.513548
Target:  5'- aGGCCGacCGcGCGguucauCGCGCuUGCCG-GCg -3'
miRNA:   3'- -CCGGC--GCuUGCau----GCGCG-GCGGCaCG- -5'
24173 5' -59.4 NC_005263.2 + 2664 0.68 0.37287
Target:  5'- cGGCgGCGAcaccggcagccuGCaGUGuCGCGCCGgCG-GCg -3'
miRNA:   3'- -CCGgCGCU------------UG-CAU-GCGCGGCgGCaCG- -5'
24173 5' -59.4 NC_005263.2 + 2700 0.66 0.473632
Target:  5'- cGGCCGCucggcAgGUGCauGCGCagCGCgCGUGCa -3'
miRNA:   3'- -CCGGCGcu---UgCAUG--CGCG--GCG-GCACG- -5'
24173 5' -59.4 NC_005263.2 + 2749 0.68 0.381414
Target:  5'- aGCCGaGAu----CGCgGCCGCCGUGCc -3'
miRNA:   3'- cCGGCgCUugcauGCG-CGGCGGCACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.