miRNA display CGI


Results 21 - 40 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24184 3' -50.9 NC_005263.2 + 15991 0.69 0.740858
Target:  5'- -cGUGAUCGAUcucgaaGCGcUCGAUCGCa--- -3'
miRNA:   3'- aaCGCUAGCUG------UGC-AGCUAGCGaaug -5'
24184 3' -50.9 NC_005263.2 + 44654 0.69 0.740858
Target:  5'- cUGCGccUCGAUGCGUCGcgCGCg--- -3'
miRNA:   3'- aACGCu-AGCUGUGCAGCuaGCGaaug -5'
24184 3' -50.9 NC_005263.2 + 25167 0.69 0.751758
Target:  5'- -cGUGAUCGACuCGcCGGUCGgaUUUGCg -3'
miRNA:   3'- aaCGCUAGCUGuGCaGCUAGC--GAAUG- -5'
24184 3' -50.9 NC_005263.2 + 32890 0.68 0.762525
Target:  5'- -gGCGAguuUCGugGCGUCGG-CGUcgGCg -3'
miRNA:   3'- aaCGCU---AGCugUGCAGCUaGCGaaUG- -5'
24184 3' -50.9 NC_005263.2 + 8705 0.68 0.803998
Target:  5'- gUGCGG-CGACAgGUCGGccgcguccaUCGCgUACu -3'
miRNA:   3'- aACGCUaGCUGUgCAGCU---------AGCGaAUG- -5'
24184 3' -50.9 NC_005263.2 + 40977 0.67 0.8236
Target:  5'- -cGCGA-CGcCACaGUCGGUCGCacgGCa -3'
miRNA:   3'- aaCGCUaGCuGUG-CAGCUAGCGaa-UG- -5'
24184 3' -50.9 NC_005263.2 + 5857 0.67 0.833076
Target:  5'- gUGCGGUCGAa--GUCGAgcCGCagGCg -3'
miRNA:   3'- aACGCUAGCUgugCAGCUa-GCGaaUG- -5'
24184 3' -50.9 NC_005263.2 + 14298 0.67 0.833076
Target:  5'- -cGCGAUCGuCAugcCGUCGA-CGCUa-- -3'
miRNA:   3'- aaCGCUAGCuGU---GCAGCUaGCGAaug -5'
24184 3' -50.9 NC_005263.2 + 16807 0.67 0.833076
Target:  5'- gUUGCGAUgaaGGCuaGCGUCGAcgCGCUcgACg -3'
miRNA:   3'- -AACGCUAg--CUG--UGCAGCUa-GCGAa-UG- -5'
24184 3' -50.9 NC_005263.2 + 30613 0.67 0.851322
Target:  5'- --uCGAUCGACGCGcCGcgCGCg--- -3'
miRNA:   3'- aacGCUAGCUGUGCaGCuaGCGaaug -5'
24184 3' -50.9 NC_005263.2 + 9728 0.66 0.860072
Target:  5'- cUUGCGcUCGuucgccacaGCAgUGUCGAUCGCggUGCg -3'
miRNA:   3'- -AACGCuAGC---------UGU-GCAGCUAGCGa-AUG- -5'
24184 3' -50.9 NC_005263.2 + 15658 0.66 0.860072
Target:  5'- -cGCGAUCGuCGCGUCGGacacguucuuUcCGCUgACc -3'
miRNA:   3'- aaCGCUAGCuGUGCAGCU----------A-GCGAaUG- -5'
24184 3' -50.9 NC_005263.2 + 19111 0.66 0.865197
Target:  5'- cUGcCGGUCGGcCGCGcCGAgcgcaucgccgggCGCUUGCg -3'
miRNA:   3'- aAC-GCUAGCU-GUGCaGCUa------------GCGAAUG- -5'
24184 3' -50.9 NC_005263.2 + 19620 0.66 0.876781
Target:  5'- -aGCGAacgccUCGuACGCGUUGAUgGCUg-- -3'
miRNA:   3'- aaCGCU-----AGC-UGUGCAGCUAgCGAaug -5'
24184 3' -50.9 NC_005263.2 + 46091 0.66 0.876781
Target:  5'- aUGCGGcCGugACGUCGGguaucauccgCGCcgGCg -3'
miRNA:   3'- aACGCUaGCugUGCAGCUa---------GCGaaUG- -5'
24184 3' -50.9 NC_005263.2 + 30208 0.66 0.876781
Target:  5'- aUGCuGAUCGGCGCGccgcCGGUCGaCUg-- -3'
miRNA:   3'- aACG-CUAGCUGUGCa---GCUAGC-GAaug -5'
24184 3' -50.9 NC_005263.2 + 23406 0.66 0.876781
Target:  5'- aUGCGAUUGcC-CGUCGAUcaacgCGCUcaUGCg -3'
miRNA:   3'- aACGCUAGCuGuGCAGCUA-----GCGA--AUG- -5'
24184 3' -50.9 NC_005263.2 + 6257 0.66 0.876781
Target:  5'- -cGCGGUCGuGC-CGUCGGgcaGCUUGa -3'
miRNA:   3'- aaCGCUAGC-UGuGCAGCUag-CGAAUg -5'
24184 3' -50.9 NC_005263.2 + 9766 0.66 0.884723
Target:  5'- -cGcCGGUCGcCGCGUgcaCGGUCGCgcGCg -3'
miRNA:   3'- aaC-GCUAGCuGUGCA---GCUAGCGaaUG- -5'
24184 3' -50.9 NC_005263.2 + 26040 0.66 0.884723
Target:  5'- -gGCGGUUGAgCuCGUCGAgcuUCGC-UGCg -3'
miRNA:   3'- aaCGCUAGCU-GuGCAGCU---AGCGaAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.