miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24204 3' -52.6 NC_005263.2 + 12169 1.09 0.00185
Target:  5'- cUGACGUGACGUAUAACGGCACGCGCGu -3'
miRNA:   3'- -ACUGCACUGCAUAUUGCCGUGCGCGC- -5'
24204 3' -52.6 NC_005263.2 + 22103 0.77 0.247815
Target:  5'- aGGCGUGACGgcUGccgcCGGCACGCuGCa -3'
miRNA:   3'- aCUGCACUGCauAUu---GCCGUGCG-CGc -5'
24204 3' -52.6 NC_005263.2 + 10683 0.76 0.312561
Target:  5'- cGACGUauGACGacgagGACGGC-CGCGCGa -3'
miRNA:   3'- aCUGCA--CUGCaua--UUGCCGuGCGCGC- -5'
24204 3' -52.6 NC_005263.2 + 47850 0.76 0.320498
Target:  5'- gUGGCGUGACGaccacaucgAACGGUACGcCGUGg -3'
miRNA:   3'- -ACUGCACUGCaua------UUGCCGUGC-GCGC- -5'
24204 3' -52.6 NC_005263.2 + 34727 0.76 0.320498
Target:  5'- gGGCGUGGCGagcaauuGCGGCGCGUGUu -3'
miRNA:   3'- aCUGCACUGCauau---UGCCGUGCGCGc -5'
24204 3' -52.6 NC_005263.2 + 23606 0.75 0.345209
Target:  5'- cGuCGUGACGUucGGCGGCAC-CGUGg -3'
miRNA:   3'- aCuGCACUGCAuaUUGCCGUGcGCGC- -5'
24204 3' -52.6 NC_005263.2 + 9823 0.75 0.353745
Target:  5'- gGGCGUGcaucACGUugacgAACGGCGCgGCGCGc -3'
miRNA:   3'- aCUGCAC----UGCAua---UUGCCGUG-CGCGC- -5'
24204 3' -52.6 NC_005263.2 + 42303 0.75 0.353745
Target:  5'- cGACGUcgagcacuucgaGACGgcgcAGCGGCGCGUGCGc -3'
miRNA:   3'- aCUGCA------------CUGCaua-UUGCCGUGCGCGC- -5'
24204 3' -52.6 NC_005263.2 + 41733 0.75 0.362429
Target:  5'- cGACGcgGGCGgcaacuucgGGCGGCACGgCGCGa -3'
miRNA:   3'- aCUGCa-CUGCaua------UUGCCGUGC-GCGC- -5'
24204 3' -52.6 NC_005263.2 + 20937 0.73 0.427234
Target:  5'- aGACGaauGCGgugAUGACGGC-CGCGCGc -3'
miRNA:   3'- aCUGCac-UGCa--UAUUGCCGuGCGCGC- -5'
24204 3' -52.6 NC_005263.2 + 21186 0.73 0.427234
Target:  5'- gGACGcgGACGcgc-GCGGCGCGgGCGa -3'
miRNA:   3'- aCUGCa-CUGCauauUGCCGUGCgCGC- -5'
24204 3' -52.6 NC_005263.2 + 33449 0.73 0.457033
Target:  5'- cGGCGUGugGggcaaGACGGCGgacgaGCGCGu -3'
miRNA:   3'- aCUGCACugCaua--UUGCCGUg----CGCGC- -5'
24204 3' -52.6 NC_005263.2 + 37483 0.73 0.467212
Target:  5'- cGGCGUGACG---AACGGCGCcgacauuccgGCGCu -3'
miRNA:   3'- aCUGCACUGCauaUUGCCGUG----------CGCGc -5'
24204 3' -52.6 NC_005263.2 + 3417 0.72 0.476471
Target:  5'- cGACGUGugcGCGcaggAUGGCcgccgacuucuucGGCGCGCGCGa -3'
miRNA:   3'- aCUGCAC---UGCa---UAUUG-------------CCGUGCGCGC- -5'
24204 3' -52.6 NC_005263.2 + 41370 0.72 0.495258
Target:  5'- gGACGUGAcgcgcgaguguguaCGUGUGGCGcucgaGCAUGCGCc -3'
miRNA:   3'- aCUGCACU--------------GCAUAUUGC-----CGUGCGCGc -5'
24204 3' -52.6 NC_005263.2 + 44533 0.72 0.498422
Target:  5'- cGAUGUGGCGaacgaUGUGGuCGGCcgACGCGCu -3'
miRNA:   3'- aCUGCACUGC-----AUAUU-GCCG--UGCGCGc -5'
24204 3' -52.6 NC_005263.2 + 26178 0.72 0.498422
Target:  5'- gGAUGagGACGgucuGCGGC-CGCGCGg -3'
miRNA:   3'- aCUGCa-CUGCauauUGCCGuGCGCGC- -5'
24204 3' -52.6 NC_005263.2 + 45303 0.72 0.519737
Target:  5'- uUGugGUcGCGUAUGACGcGC-UGCGCa -3'
miRNA:   3'- -ACugCAcUGCAUAUUGC-CGuGCGCGc -5'
24204 3' -52.6 NC_005263.2 + 43245 0.72 0.519737
Target:  5'- cGGCGgcaGCGgcaucggcACGGCGCGCGCGu -3'
miRNA:   3'- aCUGCac-UGCauau----UGCCGUGCGCGC- -5'
24204 3' -52.6 NC_005263.2 + 22172 0.71 0.541401
Target:  5'- cGACGUGACGUAcGAugcgacgacCGGCaACGCGa- -3'
miRNA:   3'- aCUGCACUGCAUaUU---------GCCG-UGCGCgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.