miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24204 3' -52.6 NC_005263.2 + 34727 0.76 0.320498
Target:  5'- gGGCGUGGCGagcaauuGCGGCGCGUGUu -3'
miRNA:   3'- aCUGCACUGCauau---UGCCGUGCGCGc -5'
24204 3' -52.6 NC_005263.2 + 35754 0.68 0.75145
Target:  5'- aGGCGcgGGCGcgGUuacuGCGGCugGCgGCGu -3'
miRNA:   3'- aCUGCa-CUGCa-UAu---UGCCGugCG-CGC- -5'
24204 3' -52.6 NC_005263.2 + 27815 0.67 0.7723
Target:  5'- gUGAuCGcGGCGUcaccuucGCGGCACGCGUu -3'
miRNA:   3'- -ACU-GCaCUGCAuau----UGCCGUGCGCGc -5'
24204 3' -52.6 NC_005263.2 + 37663 0.65 0.854806
Target:  5'- cGACGUGACacGUGACaucccgccggaucaGGCguucguugaACGCGCGc -3'
miRNA:   3'- aCUGCACUGcaUAUUG--------------CCG---------UGCGCGC- -5'
24204 3' -52.6 NC_005263.2 + 21186 0.73 0.427234
Target:  5'- gGACGcgGACGcgc-GCGGCGCGgGCGa -3'
miRNA:   3'- aCUGCa-CUGCauauUGCCGUGCgCGC- -5'
24204 3' -52.6 NC_005263.2 + 37483 0.73 0.467212
Target:  5'- cGGCGUGACG---AACGGCGCcgacauuccgGCGCu -3'
miRNA:   3'- aCUGCACUGCauaUUGCCGUG----------CGCGc -5'
24204 3' -52.6 NC_005263.2 + 12101 0.71 0.541401
Target:  5'- cGGCcUGGCaugcgcAGCGGCGCGCGCGc -3'
miRNA:   3'- aCUGcACUGcaua--UUGCCGUGCGCGC- -5'
24204 3' -52.6 NC_005263.2 + 23922 0.71 0.574427
Target:  5'- -aGCGUGAcCGUcgcuuUGGCGGCuuGCGCGu -3'
miRNA:   3'- acUGCACU-GCAu----AUUGCCGugCGCGC- -5'
24204 3' -52.6 NC_005263.2 + 19748 0.69 0.652773
Target:  5'- cGGCGcUGGCGcgcUGGCGGCGCuCGUGg -3'
miRNA:   3'- aCUGC-ACUGCau-AUUGCCGUGcGCGC- -5'
24204 3' -52.6 NC_005263.2 + 37405 0.68 0.723605
Target:  5'- cGACGUGcaucGCGUcgcgcggccguccucGUcgucauacguCGGCGCGCGCGg -3'
miRNA:   3'- aCUGCAC----UGCA---------------UAuu--------GCCGUGCGCGC- -5'
24204 3' -52.6 NC_005263.2 + 8842 0.68 0.719259
Target:  5'- uUGAUGU-AgGUA-GGCGGCGCGCGgGg -3'
miRNA:   3'- -ACUGCAcUgCAUaUUGCCGUGCGCgC- -5'
24204 3' -52.6 NC_005263.2 + 36152 0.7 0.607895
Target:  5'- -uACGUGAgGUuggcGACGGCcUGCGCGa -3'
miRNA:   3'- acUGCACUgCAua--UUGCCGuGCGCGC- -5'
24204 3' -52.6 NC_005263.2 + 23606 0.75 0.345209
Target:  5'- cGuCGUGACGUucGGCGGCAC-CGUGg -3'
miRNA:   3'- aCuGCACUGCAuaUUGCCGUGcGCGC- -5'
24204 3' -52.6 NC_005263.2 + 25901 0.68 0.719259
Target:  5'- cGACGgccgcGACGUacGUAACGGU-CGCGUu -3'
miRNA:   3'- aCUGCa----CUGCA--UAUUGCCGuGCGCGc -5'
24204 3' -52.6 NC_005263.2 + 41733 0.75 0.362429
Target:  5'- cGACGcgGGCGgcaacuucgGGCGGCACGgCGCGa -3'
miRNA:   3'- aCUGCa-CUGCaua------UUGCCGUGC-GCGC- -5'
24204 3' -52.6 NC_005263.2 + 2377 0.7 0.596704
Target:  5'- cGACGcGGCGUAacccaUGACGGCGC-CgGCGg -3'
miRNA:   3'- aCUGCaCUGCAU-----AUUGCCGUGcG-CGC- -5'
24204 3' -52.6 NC_005263.2 + 42006 0.68 0.719259
Target:  5'- aUGACGUGcCGgcaguGCGGCcggcCGCGCc -3'
miRNA:   3'- -ACUGCACuGCauau-UGCCGu---GCGCGc -5'
24204 3' -52.6 NC_005263.2 + 15470 0.67 0.761944
Target:  5'- cGACGauuUGcCGUGcuGCGGCG-GCGCGg -3'
miRNA:   3'- aCUGC---ACuGCAUauUGCCGUgCGCGC- -5'
24204 3' -52.6 NC_005263.2 + 20937 0.73 0.427234
Target:  5'- aGACGaauGCGgugAUGACGGC-CGCGCGc -3'
miRNA:   3'- aCUGCac-UGCa--UAUUGCCGuGCGCGC- -5'
24204 3' -52.6 NC_005263.2 + 41370 0.72 0.495258
Target:  5'- gGACGUGAcgcgcgaguguguaCGUGUGGCGcucgaGCAUGCGCc -3'
miRNA:   3'- aCUGCACU--------------GCAUAUUGC-----CGUGCGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.