miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24204 3' -52.6 NC_005263.2 + 1258 0.66 0.812099
Target:  5'- cGGCaUGACGUGcuccuUGGCGcGCcgccugGCGCGCGu -3'
miRNA:   3'- aCUGcACUGCAU-----AUUGC-CG------UGCGCGC- -5'
24204 3' -52.6 NC_005263.2 + 2238 0.68 0.729016
Target:  5'- cGGCGUGAuccucgaacuugcCGUAgcGCGcCGCGCGCu -3'
miRNA:   3'- aCUGCACU-------------GCAUauUGCcGUGCGCGc -5'
24204 3' -52.6 NC_005263.2 + 2377 0.7 0.596704
Target:  5'- cGACGcGGCGUAacccaUGACGGCGC-CgGCGg -3'
miRNA:   3'- aCUGCaCUGCAU-----AUUGCCGUGcG-CGC- -5'
24204 3' -52.6 NC_005263.2 + 3417 0.72 0.476471
Target:  5'- cGACGUGugcGCGcaggAUGGCcgccgacuucuucGGCGCGCGCGa -3'
miRNA:   3'- aCUGCAC---UGCa---UAUUG-------------CCGUGCGCGC- -5'
24204 3' -52.6 NC_005263.2 + 3702 0.67 0.792547
Target:  5'- cGACGUcGACGcc-AAUGcCGCGCGCGu -3'
miRNA:   3'- aCUGCA-CUGCauaUUGCcGUGCGCGC- -5'
24204 3' -52.6 NC_005263.2 + 4535 0.66 0.839031
Target:  5'- cGACGUGcgGCGcUGUgccGACGGCggcauugACGCGUa -3'
miRNA:   3'- aCUGCAC--UGC-AUA---UUGCCG-------UGCGCGc -5'
24204 3' -52.6 NC_005263.2 + 5537 0.67 0.7723
Target:  5'- aUGcCGUGGCcggcAACGGcCugGCGCGa -3'
miRNA:   3'- -ACuGCACUGcauaUUGCC-GugCGCGC- -5'
24204 3' -52.6 NC_005263.2 + 6602 0.67 0.7723
Target:  5'- cGACGcGaucGCGUucGGCGGCGCGCuCGg -3'
miRNA:   3'- aCUGCaC---UGCAuaUUGCCGUGCGcGC- -5'
24204 3' -52.6 NC_005263.2 + 8575 0.68 0.75145
Target:  5'- cGGCGUGuCGUccGUuACGcCGCGCGCu -3'
miRNA:   3'- aCUGCACuGCA--UAuUGCcGUGCGCGc -5'
24204 3' -52.6 NC_005263.2 + 8842 0.68 0.719259
Target:  5'- uUGAUGU-AgGUA-GGCGGCGCGCGgGg -3'
miRNA:   3'- -ACUGCAcUgCAUaUUGCCGUGCGCgC- -5'
24204 3' -52.6 NC_005263.2 + 9527 0.7 0.630331
Target:  5'- cGcCGUGagcGCGUcgGACGGCaACGCGUc -3'
miRNA:   3'- aCuGCAC---UGCAuaUUGCCG-UGCGCGc -5'
24204 3' -52.6 NC_005263.2 + 9588 0.66 0.830865
Target:  5'- -uGCGUGcCGUcccAUuGCGGCA-GCGCGa -3'
miRNA:   3'- acUGCACuGCA---UAuUGCCGUgCGCGC- -5'
24204 3' -52.6 NC_005263.2 + 9823 0.75 0.353745
Target:  5'- gGGCGUGcaucACGUugacgAACGGCGCgGCGCGc -3'
miRNA:   3'- aCUGCAC----UGCAua---UUGCCGUG-CGCGC- -5'
24204 3' -52.6 NC_005263.2 + 10683 0.76 0.312561
Target:  5'- cGACGUauGACGacgagGACGGC-CGCGCGa -3'
miRNA:   3'- aCUGCA--CUGCaua--UUGCCGuGCGCGC- -5'
24204 3' -52.6 NC_005263.2 + 10863 0.67 0.761944
Target:  5'- cGGCGUcgcGGCGgaacuCGGCaccgGCGCGCGu -3'
miRNA:   3'- aCUGCA---CUGCauauuGCCG----UGCGCGC- -5'
24204 3' -52.6 NC_005263.2 + 11803 0.66 0.830865
Target:  5'- gGACGUcGCGUGUcGCuGCAUGuCGUGg -3'
miRNA:   3'- aCUGCAcUGCAUAuUGcCGUGC-GCGC- -5'
24204 3' -52.6 NC_005263.2 + 12101 0.71 0.541401
Target:  5'- cGGCcUGGCaugcgcAGCGGCGCGCGCGc -3'
miRNA:   3'- aCUGcACUGcaua--UUGCCGUGCGCGC- -5'
24204 3' -52.6 NC_005263.2 + 12169 1.09 0.00185
Target:  5'- cUGACGUGACGUAUAACGGCACGCGCGu -3'
miRNA:   3'- -ACUGCACUGCAUAUUGCCGUGCGCGC- -5'
24204 3' -52.6 NC_005263.2 + 13907 0.66 0.830865
Target:  5'- cGACGUGACGaacGACaGCGCGUccauGCu -3'
miRNA:   3'- aCUGCACUGCauaUUGcCGUGCG----CGc -5'
24204 3' -52.6 NC_005263.2 + 14246 0.66 0.819704
Target:  5'- gUGGCGUG-CGggcuggcuuGCGGCggccggcgcaACGCGCGc -3'
miRNA:   3'- -ACUGCACuGCauau-----UGCCG----------UGCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.