miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24204 5' -58 NC_005263.2 + 31062 0.66 0.545232
Target:  5'- aGUCGCCcGUcgaucGUCUUGGCCGCGaCGcGCu -3'
miRNA:   3'- -CAGCGGaCA-----CAGAGCUGGCGUgGC-UG- -5'
24204 5' -58 NC_005263.2 + 18913 0.66 0.545232
Target:  5'- --gGCCUGcGUCgagcgUGACCGCG-CGGCa -3'
miRNA:   3'- cagCGGACaCAGa----GCUGGCGUgGCUG- -5'
24204 5' -58 NC_005263.2 + 2680 0.66 0.545232
Target:  5'- --aGCCUgcaGUGUCgcgcCGGCgGCgGCCGACa -3'
miRNA:   3'- cagCGGA---CACAGa---GCUGgCG-UGGCUG- -5'
24204 5' -58 NC_005263.2 + 25176 0.66 0.503346
Target:  5'- cUCGCCg--GUCggauuugCGugCGUGCCGAUg -3'
miRNA:   3'- cAGCGGacaCAGa------GCugGCGUGGCUG- -5'
24204 5' -58 NC_005263.2 + 4580 0.66 0.503346
Target:  5'- gGUCGgCaaucGUCUuuuccaugaaCGGCCGCGCCGGCa -3'
miRNA:   3'- -CAGCgGaca-CAGA----------GCUGGCGUGGCUG- -5'
24204 5' -58 NC_005263.2 + 4313 0.66 0.503346
Target:  5'- uUCaCCUGUGUgaUCGcGCCGCGCaCGAUa -3'
miRNA:   3'- cAGcGGACACAg-AGC-UGGCGUG-GCUG- -5'
24204 5' -58 NC_005263.2 + 12344 0.66 0.503346
Target:  5'- cGUgGCCgGUuuccucaagcGUCUCGcGCCGCGCCG-Cu -3'
miRNA:   3'- -CAgCGGaCA----------CAGAGC-UGGCGUGGCuG- -5'
24204 5' -58 NC_005263.2 + 15995 0.67 0.472871
Target:  5'- aUCGaUCUcgaagcgCUCGAUCGCACCGACg -3'
miRNA:   3'- cAGC-GGAcaca---GAGCUGGCGUGGCUG- -5'
24204 5' -58 NC_005263.2 + 39416 0.67 0.46292
Target:  5'- uGUCGCCgcaccUGUCgUCGACCGguUCGuCg -3'
miRNA:   3'- -CAGCGGac---ACAG-AGCUGGCguGGCuG- -5'
24204 5' -58 NC_005263.2 + 1604 0.67 0.46292
Target:  5'- uUCGCC-GU-UUUCGACCGCAuCCGGg -3'
miRNA:   3'- cAGCGGaCAcAGAGCUGGCGU-GGCUg -5'
24204 5' -58 NC_005263.2 + 19092 0.67 0.447231
Target:  5'- cGUCGCg-GUG-CgcaacgcacugccggUCGGCCGCGCCGAg -3'
miRNA:   3'- -CAGCGgaCACaG---------------AGCUGGCGUGGCUg -5'
24204 5' -58 NC_005263.2 + 33963 0.67 0.443354
Target:  5'- aGUCGCCaa-Gg--CGGCCGCGCUGGCc -3'
miRNA:   3'- -CAGCGGacaCagaGCUGGCGUGGCUG- -5'
24204 5' -58 NC_005263.2 + 31573 0.68 0.414903
Target:  5'- -gCGCC-GUG-CUCGACaaCGCCGACa -3'
miRNA:   3'- caGCGGaCACaGAGCUGgcGUGGCUG- -5'
24204 5' -58 NC_005263.2 + 42248 0.68 0.39657
Target:  5'- -cCGCCUGcgGcUCgacuUCGACCGCacgacgGCCGACa -3'
miRNA:   3'- caGCGGACa-C-AG----AGCUGGCG------UGGCUG- -5'
24204 5' -58 NC_005263.2 + 3905 0.68 0.387601
Target:  5'- uUCGCacccucgGUGUCUUu-CUGCACCGGCa -3'
miRNA:   3'- cAGCGga-----CACAGAGcuGGCGUGGCUG- -5'
24204 5' -58 NC_005263.2 + 24056 0.68 0.387601
Target:  5'- uUCGCgCUGuUGUUgUCGGCCGUGCUGAUc -3'
miRNA:   3'- cAGCG-GAC-ACAG-AGCUGGCGUGGCUG- -5'
24204 5' -58 NC_005263.2 + 22781 0.68 0.386712
Target:  5'- cGUCGCCgcguuUGUGagcggcuUCUCGACCGa--CGACg -3'
miRNA:   3'- -CAGCGG-----ACAC-------AGAGCUGGCgugGCUG- -5'
24204 5' -58 NC_005263.2 + 41479 0.69 0.344804
Target:  5'- -aCGCgCgacUG-CUCGACCGCGCCGAg -3'
miRNA:   3'- caGCG-Gac-ACaGAGCUGGCGUGGCUg -5'
24204 5' -58 NC_005263.2 + 45401 0.7 0.335051
Target:  5'- cUCGCCgacgaacucgGUCugUCGGCCGCcGCCGGCg -3'
miRNA:   3'- cAGCGGaca-------CAG--AGCUGGCG-UGGCUG- -5'
24204 5' -58 NC_005263.2 + 30713 0.7 0.328661
Target:  5'- -cCGCCaGgcgCgCGGCCGCGCCGGCa -3'
miRNA:   3'- caGCGGaCacaGaGCUGGCGUGGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.