miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24212 5' -53.5 NC_005263.2 + 10090 1.11 0.001006
Target:  5'- gGGCAGCGCGUCGAGAAUGUUCGCGACc -3'
miRNA:   3'- -CCGUCGCGCAGCUCUUACAAGCGCUG- -5'
24212 5' -53.5 NC_005263.2 + 30373 0.82 0.106736
Target:  5'- uGCAGCGCuUCGGGGAUGUgCGCGAUc -3'
miRNA:   3'- cCGUCGCGcAGCUCUUACAaGCGCUG- -5'
24212 5' -53.5 NC_005263.2 + 13083 0.77 0.208968
Target:  5'- uGCAGUGCGUCGAGGccGgacaGCGGCg -3'
miRNA:   3'- cCGUCGCGCAGCUCUuaCaag-CGCUG- -5'
24212 5' -53.5 NC_005263.2 + 111 0.77 0.220527
Target:  5'- cGGUAGuCGUGUCGAG---GUUCGUGACg -3'
miRNA:   3'- -CCGUC-GCGCAGCUCuuaCAAGCGCUG- -5'
24212 5' -53.5 NC_005263.2 + 33335 0.76 0.251819
Target:  5'- aGGCGuGCGCGUCGGGcagcUUUGCGACu -3'
miRNA:   3'- -CCGU-CGCGCAGCUCuuacAAGCGCUG- -5'
24212 5' -53.5 NC_005263.2 + 1437 0.74 0.317219
Target:  5'- uGGCuGCGCG-CGAGGc--UUCGCGGCg -3'
miRNA:   3'- -CCGuCGCGCaGCUCUuacAAGCGCUG- -5'
24212 5' -53.5 NC_005263.2 + 25709 0.73 0.385434
Target:  5'- cGGCGGCGCGUac-----GUUCGCGGCc -3'
miRNA:   3'- -CCGUCGCGCAgcucuuaCAAGCGCUG- -5'
24212 5' -53.5 NC_005263.2 + 43577 0.73 0.403938
Target:  5'- cGGCacAGCGCcgcacGUCgguaGAGAAUGUgCGCGACg -3'
miRNA:   3'- -CCG--UCGCG-----CAG----CUCUUACAaGCGCUG- -5'
24212 5' -53.5 NC_005263.2 + 5121 0.73 0.403938
Target:  5'- -aUAGCGCGUCGAGcuUGUU-GCGAUc -3'
miRNA:   3'- ccGUCGCGCAGCUCuuACAAgCGCUG- -5'
24212 5' -53.5 NC_005263.2 + 28059 0.72 0.429789
Target:  5'- aGCAGCGCGUCGcacucaacgCGCGGCa -3'
miRNA:   3'- cCGUCGCGCAGCucuuacaa-GCGCUG- -5'
24212 5' -53.5 NC_005263.2 + 12668 0.72 0.432721
Target:  5'- cGGcCGGCGCGcCGGGGucGUcGUUCGCGuCg -3'
miRNA:   3'- -CC-GUCGCGCaGCUCU--UA-CAAGCGCuG- -5'
24212 5' -53.5 NC_005263.2 + 47373 0.72 0.45256
Target:  5'- gGGCGGCGCGuUCGA---UGcgCGCGAg -3'
miRNA:   3'- -CCGUCGCGC-AGCUcuuACaaGCGCUg -5'
24212 5' -53.5 NC_005263.2 + 19410 0.72 0.45256
Target:  5'- cGGCAacgcGCGCGUUGAG-GUGUUCGgCGuGCc -3'
miRNA:   3'- -CCGU----CGCGCAGCUCuUACAAGC-GC-UG- -5'
24212 5' -53.5 NC_005263.2 + 3562 0.71 0.48322
Target:  5'- cGCAGCGCGUCGGccGAccacAUcGUUCGCcACa -3'
miRNA:   3'- cCGUCGCGCAGCU--CU----UA-CAAGCGcUG- -5'
24212 5' -53.5 NC_005263.2 + 20670 0.7 0.525573
Target:  5'- cGCGGC-CGUCGAaaGcGUGUUCgGCGGCg -3'
miRNA:   3'- cCGUCGcGCAGCU--CuUACAAG-CGCUG- -5'
24212 5' -53.5 NC_005263.2 + 36228 0.7 0.536386
Target:  5'- cGGCGcCGCGUCGucAGAuAUGUUCGaCGAa -3'
miRNA:   3'- -CCGUcGCGCAGC--UCU-UACAAGC-GCUg -5'
24212 5' -53.5 NC_005263.2 + 18912 0.7 0.536386
Target:  5'- cGGCc-UGCGUCGAGcGUGaccgCGCGGCa -3'
miRNA:   3'- -CCGucGCGCAGCUCuUACaa--GCGCUG- -5'
24212 5' -53.5 NC_005263.2 + 24699 0.7 0.536386
Target:  5'- cGGCGGCGCGcCGAacGUGccggGCGGCg -3'
miRNA:   3'- -CCGUCGCGCaGCUcuUACaag-CGCUG- -5'
24212 5' -53.5 NC_005263.2 + 38409 0.7 0.558233
Target:  5'- cGCAGCG-GUCGAGcAGgcaaagCGCGACg -3'
miRNA:   3'- cCGUCGCgCAGCUC-UUacaa--GCGCUG- -5'
24212 5' -53.5 NC_005263.2 + 3491 0.7 0.569253
Target:  5'- cGCAGCGaGUCGGGcaaguUGUcgcgCGCGGCa -3'
miRNA:   3'- cCGUCGCgCAGCUCuu---ACAa---GCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.