miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24212 5' -53.5 NC_005263.2 + 13083 0.77 0.208968
Target:  5'- uGCAGUGCGUCGAGGccGgacaGCGGCg -3'
miRNA:   3'- cCGUCGCGCAGCUCUuaCaag-CGCUG- -5'
24212 5' -53.5 NC_005263.2 + 8853 0.68 0.658553
Target:  5'- aGGCGGCGCG-CGGGG-----CGCGAg -3'
miRNA:   3'- -CCGUCGCGCaGCUCUuacaaGCGCUg -5'
24212 5' -53.5 NC_005263.2 + 45668 0.68 0.669712
Target:  5'- uGGCcgcguuGCGCcagaaacaacucGUCGAGcgGAUGUgUCGCGGCg -3'
miRNA:   3'- -CCGu-----CGCG------------CAGCUC--UUACA-AGCGCUG- -5'
24212 5' -53.5 NC_005263.2 + 18586 0.65 0.804236
Target:  5'- cGGCcacugcuGGCGCGcCGAcGGAcgccgcagcggcGUUCGCGGCa -3'
miRNA:   3'- -CCG-------UCGCGCaGCU-CUUa-----------CAAGCGCUG- -5'
24212 5' -53.5 NC_005263.2 + 43577 0.73 0.403938
Target:  5'- cGGCacAGCGCcgcacGUCgguaGAGAAUGUgCGCGACg -3'
miRNA:   3'- -CCG--UCGCG-----CAG----CUCUUACAaGCGCUG- -5'
24212 5' -53.5 NC_005263.2 + 12668 0.72 0.432721
Target:  5'- cGGcCGGCGCGcCGGGGucGUcGUUCGCGuCg -3'
miRNA:   3'- -CC-GUCGCGCaGCUCU--UA-CAAGCGCuG- -5'
24212 5' -53.5 NC_005263.2 + 3562 0.71 0.48322
Target:  5'- cGCAGCGCGUCGGccGAccacAUcGUUCGCcACa -3'
miRNA:   3'- cCGUCGCGCAGCU--CU----UA-CAAGCGcUG- -5'
24212 5' -53.5 NC_005263.2 + 20670 0.7 0.525573
Target:  5'- cGCGGC-CGUCGAaaGcGUGUUCgGCGGCg -3'
miRNA:   3'- cCGUCGcGCAGCU--CuUACAAG-CGCUG- -5'
24212 5' -53.5 NC_005263.2 + 23941 0.69 0.591443
Target:  5'- cGGCuuGCGCGUCGuGAg----CGUGACg -3'
miRNA:   3'- -CCGu-CGCGCAGCuCUuacaaGCGCUG- -5'
24212 5' -53.5 NC_005263.2 + 30397 0.68 0.636171
Target:  5'- cGGCGGCGCucGUCGGGA----UCG-GACa -3'
miRNA:   3'- -CCGUCGCG--CAGCUCUuacaAGCgCUG- -5'
24212 5' -53.5 NC_005263.2 + 30216 0.69 0.602595
Target:  5'- cGGC-GCGCcgccgGUCGAcuGAucGUUCGCGGCg -3'
miRNA:   3'- -CCGuCGCG-----CAGCU--CUuaCAAGCGCUG- -5'
24212 5' -53.5 NC_005263.2 + 2451 0.69 0.578107
Target:  5'- cGGCAaacacuuGCGCGcCGAacGAAgccgcguUGUUCGUGACg -3'
miRNA:   3'- -CCGU-------CGCGCaGCU--CUU-------ACAAGCGCUG- -5'
24212 5' -53.5 NC_005263.2 + 111 0.77 0.220527
Target:  5'- cGGUAGuCGUGUCGAG---GUUCGUGACg -3'
miRNA:   3'- -CCGUC-GCGCAGCUCuuaCAAGCGCUG- -5'
24212 5' -53.5 NC_005263.2 + 33172 0.69 0.624969
Target:  5'- uGCAuCGCGaCGGGGAUGUcgagugguUCGCGAUc -3'
miRNA:   3'- cCGUcGCGCaGCUCUUACA--------AGCGCUG- -5'
24212 5' -53.5 NC_005263.2 + 33335 0.76 0.251819
Target:  5'- aGGCGuGCGCGUCGGGcagcUUUGCGACu -3'
miRNA:   3'- -CCGU-CGCGCAGCUCuuacAAGCGCUG- -5'
24212 5' -53.5 NC_005263.2 + 29243 0.7 0.569253
Target:  5'- aGCGGCGCGcCGAGGcacgcguUGUUcacgcggucgaaCGCGGCa -3'
miRNA:   3'- cCGUCGCGCaGCUCUu------ACAA------------GCGCUG- -5'
24212 5' -53.5 NC_005263.2 + 42702 0.69 0.624969
Target:  5'- cGCAGgGCGUUGcAGAGggcggccGUUUGUGACu -3'
miRNA:   3'- cCGUCgCGCAGC-UCUUa------CAAGCGCUG- -5'
24212 5' -53.5 NC_005263.2 + 42133 0.68 0.658553
Target:  5'- uGCuGCGCGaCGAGGcGUG-UCGCGAg -3'
miRNA:   3'- cCGuCGCGCaGCUCU-UACaAGCGCUg -5'
24212 5' -53.5 NC_005263.2 + 25709 0.73 0.385434
Target:  5'- cGGCGGCGCGUac-----GUUCGCGGCc -3'
miRNA:   3'- -CCGUCGCGCAgcucuuaCAAGCGCUG- -5'
24212 5' -53.5 NC_005263.2 + 47373 0.72 0.45256
Target:  5'- gGGCGGCGCGuUCGA---UGcgCGCGAg -3'
miRNA:   3'- -CCGUCGCGC-AGCUcuuACaaGCGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.