miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24212 5' -53.5 NC_005263.2 + 111 0.77 0.220527
Target:  5'- cGGUAGuCGUGUCGAG---GUUCGUGACg -3'
miRNA:   3'- -CCGUC-GCGCAGCUCuuaCAAGCGCUG- -5'
24212 5' -53.5 NC_005263.2 + 1437 0.74 0.317219
Target:  5'- uGGCuGCGCG-CGAGGc--UUCGCGGCg -3'
miRNA:   3'- -CCGuCGCGCaGCUCUuacAAGCGCUG- -5'
24212 5' -53.5 NC_005263.2 + 2451 0.69 0.578107
Target:  5'- cGGCAaacacuuGCGCGcCGAacGAAgccgcguUGUUCGUGACg -3'
miRNA:   3'- -CCGU-------CGCGCaGCU--CUU-------ACAAGCGCUG- -5'
24212 5' -53.5 NC_005263.2 + 3194 0.67 0.702921
Target:  5'- cGCuGCGCGUCGGcGAg---CGCGGCc -3'
miRNA:   3'- cCGuCGCGCAGCUcUUacaaGCGCUG- -5'
24212 5' -53.5 NC_005263.2 + 3491 0.7 0.569253
Target:  5'- cGCAGCGaGUCGGGcaaguUGUcgcgCGCGGCa -3'
miRNA:   3'- cCGUCGCgCAGCUCuu---ACAa---GCGCUG- -5'
24212 5' -53.5 NC_005263.2 + 3540 0.67 0.735486
Target:  5'- cGCGGCcgGCGUCGuccAUGUccucgccaagcgUCGCGGCg -3'
miRNA:   3'- cCGUCG--CGCAGCucuUACA------------AGCGCUG- -5'
24212 5' -53.5 NC_005263.2 + 3562 0.71 0.48322
Target:  5'- cGCAGCGCGUCGGccGAccacAUcGUUCGCcACa -3'
miRNA:   3'- cCGUCGCGCAGCU--CU----UA-CAAGCGcUG- -5'
24212 5' -53.5 NC_005263.2 + 5121 0.73 0.403938
Target:  5'- -aUAGCGCGUCGAGcuUGUU-GCGAUc -3'
miRNA:   3'- ccGUCGCGCAGCUCuuACAAgCGCUG- -5'
24212 5' -53.5 NC_005263.2 + 5501 0.66 0.787448
Target:  5'- aGGgGGCGCGgCGAGGAUGgUCcuaagauCGGCu -3'
miRNA:   3'- -CCgUCGCGCaGCUCUUACaAGc------GCUG- -5'
24212 5' -53.5 NC_005263.2 + 6508 0.66 0.797386
Target:  5'- -aCGGCGCGUUGAagccgGUcgugagcaUCGCGACg -3'
miRNA:   3'- ccGUCGCGCAGCUcuua-CA--------AGCGCUG- -5'
24212 5' -53.5 NC_005263.2 + 6617 0.67 0.745081
Target:  5'- cGGCGGCGCGcUCGGcGcgGUcgagcagUCGCG-Cg -3'
miRNA:   3'- -CCGUCGCGC-AGCUcUuaCA-------AGCGCuG- -5'
24212 5' -53.5 NC_005263.2 + 8734 0.69 0.613774
Target:  5'- uGCGGUGCGUCGuAGAAg---CGCGcCg -3'
miRNA:   3'- cCGUCGCGCAGC-UCUUacaaGCGCuG- -5'
24212 5' -53.5 NC_005263.2 + 8853 0.68 0.658553
Target:  5'- aGGCGGCGCG-CGGGG-----CGCGAg -3'
miRNA:   3'- -CCGUCGCGCaGCUCUuacaaGCGCUg -5'
24212 5' -53.5 NC_005263.2 + 10090 1.11 0.001006
Target:  5'- gGGCAGCGCGUCGAGAAUGUUCGCGACc -3'
miRNA:   3'- -CCGUCGCGCAGCUCUUACAAGCGCUG- -5'
24212 5' -53.5 NC_005263.2 + 12668 0.72 0.432721
Target:  5'- cGGcCGGCGCGcCGGGGucGUcGUUCGCGuCg -3'
miRNA:   3'- -CC-GUCGCGCaGCUCU--UA-CAAGCGCuG- -5'
24212 5' -53.5 NC_005263.2 + 13083 0.77 0.208968
Target:  5'- uGCAGUGCGUCGAGGccGgacaGCGGCg -3'
miRNA:   3'- cCGUCGCGCAGCUCUuaCaag-CGCUG- -5'
24212 5' -53.5 NC_005263.2 + 14050 0.66 0.777343
Target:  5'- gGGCGcCGCGUCGAGcgcauUGagCGCGcCg -3'
miRNA:   3'- -CCGUcGCGCAGCUCuu---ACaaGCGCuG- -5'
24212 5' -53.5 NC_005263.2 + 14881 0.66 0.787448
Target:  5'- cGCAGCuuGUCGGccGAGUGcaggUGCGGCa -3'
miRNA:   3'- cCGUCGcgCAGCU--CUUACaa--GCGCUG- -5'
24212 5' -53.5 NC_005263.2 + 17502 0.69 0.624969
Target:  5'- cGCGGCGCGUCGAucGAucag--GCGGCg -3'
miRNA:   3'- cCGUCGCGCAGCU--CUuacaagCGCUG- -5'
24212 5' -53.5 NC_005263.2 + 17575 0.67 0.735486
Target:  5'- aGCAGCGCaUCGAGc-UGcUCGCGcaGCg -3'
miRNA:   3'- cCGUCGCGcAGCUCuuACaAGCGC--UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.