miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24215 3' -57.1 NC_005263.2 + 9015 1.11 0.00046
Target:  5'- cGCGCGUACUCGCCGUCCGGCUCAACGa -3'
miRNA:   3'- -CGCGCAUGAGCGGCAGGCCGAGUUGC- -5'
24215 3' -57.1 NC_005263.2 + 21579 0.89 0.019835
Target:  5'- cCGCGUGCUCGCCG-CCGGCgUCGACGc -3'
miRNA:   3'- cGCGCAUGAGCGGCaGGCCG-AGUUGC- -5'
24215 3' -57.1 NC_005263.2 + 29219 0.83 0.053119
Target:  5'- gGCGCGUAUUUGCCGU-CGGCgcgCAGCGg -3'
miRNA:   3'- -CGCGCAUGAGCGGCAgGCCGa--GUUGC- -5'
24215 3' -57.1 NC_005263.2 + 9975 0.81 0.07695
Target:  5'- uGCGgGUGCgcaCGCCGUCCGGUUCGcCGu -3'
miRNA:   3'- -CGCgCAUGa--GCGGCAGGCCGAGUuGC- -5'
24215 3' -57.1 NC_005263.2 + 20139 0.78 0.10779
Target:  5'- cGCGCGcagcaGCUcugggccauccgCGCCGUCCGGCUCAucgACGa -3'
miRNA:   3'- -CGCGCa----UGA------------GCGGCAGGCCGAGU---UGC- -5'
24215 3' -57.1 NC_005263.2 + 37706 0.77 0.145927
Target:  5'- cGCGCGccggacccGCUCGCCGgCCGGCcCGGCGc -3'
miRNA:   3'- -CGCGCa-------UGAGCGGCaGGCCGaGUUGC- -5'
24215 3' -57.1 NC_005263.2 + 12237 0.76 0.158293
Target:  5'- uGCgGUGUGCUCGUCGUUCaGUUCGACGu -3'
miRNA:   3'- -CG-CGCAUGAGCGGCAGGcCGAGUUGC- -5'
24215 3' -57.1 NC_005263.2 + 22413 0.76 0.162621
Target:  5'- cGCGCcgccGUGCUCGCCGugUCCGGggUGACGg -3'
miRNA:   3'- -CGCG----CAUGAGCGGC--AGGCCgaGUUGC- -5'
24215 3' -57.1 NC_005263.2 + 12692 0.75 0.185893
Target:  5'- uCGCGUcgaGCUUgccggcguagggGCCGUCCGGCUCggUGu -3'
miRNA:   3'- cGCGCA---UGAG------------CGGCAGGCCGAGuuGC- -5'
24215 3' -57.1 NC_005263.2 + 24814 0.75 0.195998
Target:  5'- gGCGCGUAUUCgGCCuauacggCCGGCggCAACGg -3'
miRNA:   3'- -CGCGCAUGAG-CGGca-----GGCCGa-GUUGC- -5'
24215 3' -57.1 NC_005263.2 + 18213 0.73 0.235208
Target:  5'- cGCGCaGUAUcacaCGCUGUCCGGCcgcgCGACGu -3'
miRNA:   3'- -CGCG-CAUGa---GCGGCAGGCCGa---GUUGC- -5'
24215 3' -57.1 NC_005263.2 + 33648 0.73 0.253937
Target:  5'- -gGCGUGC-CGCCGcUCGGCUCGAa- -3'
miRNA:   3'- cgCGCAUGaGCGGCaGGCCGAGUUgc -5'
24215 3' -57.1 NC_005263.2 + 864 0.73 0.267093
Target:  5'- -aGCGUACcCGUCGUgCCGGC-CGGCGc -3'
miRNA:   3'- cgCGCAUGaGCGGCA-GGCCGaGUUGC- -5'
24215 3' -57.1 NC_005263.2 + 897 0.71 0.325227
Target:  5'- aGCGCGgcGgUCGCCG-CCGGCggguuacucgUCGACGc -3'
miRNA:   3'- -CGCGCa-UgAGCGGCaGGCCG----------AGUUGC- -5'
24215 3' -57.1 NC_005263.2 + 37591 0.71 0.34933
Target:  5'- cGUGCGUcaGCUCGCCGacgcgCUGGUuuaUCAGCc -3'
miRNA:   3'- -CGCGCA--UGAGCGGCa----GGCCG---AGUUGc -5'
24215 3' -57.1 NC_005263.2 + 23606 0.7 0.357642
Target:  5'- cGCuGaCGUACgCGCCGUUCGGCUUccgcacgaugAACGg -3'
miRNA:   3'- -CG-C-GCAUGaGCGGCAGGCCGAG----------UUGC- -5'
24215 3' -57.1 NC_005263.2 + 11537 0.7 0.382521
Target:  5'- gGCGCGgu-UCGUCGUcaccuugCCGcGCUCGACGa -3'
miRNA:   3'- -CGCGCaugAGCGGCA-------GGC-CGAGUUGC- -5'
24215 3' -57.1 NC_005263.2 + 44367 0.7 0.3834
Target:  5'- gGCaCGUACgCGCUGaUCCGGCcCGGCGu -3'
miRNA:   3'- -CGcGCAUGaGCGGC-AGGCCGaGUUGC- -5'
24215 3' -57.1 NC_005263.2 + 27796 0.7 0.391364
Target:  5'- cGCGCgGUACaUCGCCGUCgugaucgCGGCgUCAccuucGCGg -3'
miRNA:   3'- -CGCG-CAUG-AGCGGCAG-------GCCG-AGU-----UGC- -5'
24215 3' -57.1 NC_005263.2 + 6147 0.7 0.392255
Target:  5'- cCGCagccCUCGCUGUCCGGCUCc--- -3'
miRNA:   3'- cGCGcau-GAGCGGCAGGCCGAGuugc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.