miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24215 3' -57.1 NC_005263.2 + 29219 0.83 0.053119
Target:  5'- gGCGCGUAUUUGCCGU-CGGCgcgCAGCGg -3'
miRNA:   3'- -CGCGCAUGAGCGGCAgGCCGa--GUUGC- -5'
24215 3' -57.1 NC_005263.2 + 9887 0.68 0.467647
Target:  5'- gGCGCuuucaUGCUCGUCGUC-GGCgcgCGGCGu -3'
miRNA:   3'- -CGCGc----AUGAGCGGCAGgCCGa--GUUGC- -5'
24215 3' -57.1 NC_005263.2 + 32562 0.68 0.467647
Target:  5'- cGCGCuUACUCGCCGa--GGUUCAggacaACGa -3'
miRNA:   3'- -CGCGcAUGAGCGGCaggCCGAGU-----UGC- -5'
24215 3' -57.1 NC_005263.2 + 21227 0.66 0.625077
Target:  5'- aGCGCGU-CgcaGCCGUcaCCGGC--GACGa -3'
miRNA:   3'- -CGCGCAuGag-CGGCA--GGCCGagUUGC- -5'
24215 3' -57.1 NC_005263.2 + 12237 0.76 0.158293
Target:  5'- uGCgGUGUGCUCGUCGUUCaGUUCGACGu -3'
miRNA:   3'- -CG-CGCAUGAGCGGCAGGcCGAGUUGC- -5'
24215 3' -57.1 NC_005263.2 + 12692 0.75 0.185893
Target:  5'- uCGCGUcgaGCUUgccggcguagggGCCGUCCGGCUCggUGu -3'
miRNA:   3'- cGCGCA---UGAG------------CGGCAGGCCGAGuuGC- -5'
24215 3' -57.1 NC_005263.2 + 11537 0.7 0.382521
Target:  5'- gGCGCGgu-UCGUCGUcaccuugCCGcGCUCGACGa -3'
miRNA:   3'- -CGCGCaugAGCGGCA-------GGC-CGAGUUGC- -5'
24215 3' -57.1 NC_005263.2 + 27796 0.7 0.391364
Target:  5'- cGCGCgGUACaUCGCCGUCgugaucgCGGCgUCAccuucGCGg -3'
miRNA:   3'- -CGCG-CAUG-AGCGGCAG-------GCCG-AGU-----UGC- -5'
24215 3' -57.1 NC_005263.2 + 12304 0.69 0.41036
Target:  5'- uCGuCGUACUUGCCGagCGGCgcCAGCa -3'
miRNA:   3'- cGC-GCAUGAGCGGCagGCCGa-GUUGc -5'
24215 3' -57.1 NC_005263.2 + 31518 0.69 0.457807
Target:  5'- cGCGCGaGCccggcgaacgcgUCGCCG-CCGGcCUUGGCGu -3'
miRNA:   3'- -CGCGCaUG------------AGCGGCaGGCC-GAGUUGC- -5'
24215 3' -57.1 NC_005263.2 + 45939 0.69 0.419606
Target:  5'- gGCGCGU-CUCGCg--CCGGaUCAGCGc -3'
miRNA:   3'- -CGCGCAuGAGCGgcaGGCCgAGUUGC- -5'
24215 3' -57.1 NC_005263.2 + 5793 0.7 0.401243
Target:  5'- aCGCGccGCUgCGCCGUCuCGaaguGCUCGACGu -3'
miRNA:   3'- cGCGCa-UGA-GCGGCAG-GC----CGAGUUGC- -5'
24215 3' -57.1 NC_005263.2 + 9975 0.81 0.07695
Target:  5'- uGCGgGUGCgcaCGCCGUCCGGUUCGcCGu -3'
miRNA:   3'- -CGCgCAUGa--GCGGCAGGCCGAGUuGC- -5'
24215 3' -57.1 NC_005263.2 + 47229 0.69 0.428976
Target:  5'- cGCGCuGaACgaagCGCCGgCCGGCaCGACGg -3'
miRNA:   3'- -CGCG-CaUGa---GCGGCaGGCCGaGUUGC- -5'
24215 3' -57.1 NC_005263.2 + 20139 0.78 0.10779
Target:  5'- cGCGCGcagcaGCUcugggccauccgCGCCGUCCGGCUCAucgACGa -3'
miRNA:   3'- -CGCGCa----UGA------------GCGGCAGGCCGAGU---UGC- -5'
24215 3' -57.1 NC_005263.2 + 17189 0.7 0.392255
Target:  5'- cGCgGCGUACgcCGUCG-CCGcGCUCGACu -3'
miRNA:   3'- -CG-CGCAUGa-GCGGCaGGC-CGAGUUGc -5'
24215 3' -57.1 NC_005263.2 + 8521 0.69 0.44808
Target:  5'- aCGUGgcgACcuUCGUCGU-CGGCUCGGCGg -3'
miRNA:   3'- cGCGCa--UG--AGCGGCAgGCCGAGUUGC- -5'
24215 3' -57.1 NC_005263.2 + 38570 0.68 0.467647
Target:  5'- uGUGCGacGCgUUGCCGUCCGacgcGCUCAcgGCGa -3'
miRNA:   3'- -CGCGCa-UG-AGCGGCAGGC----CGAGU--UGC- -5'
24215 3' -57.1 NC_005263.2 + 37706 0.77 0.145927
Target:  5'- cGCGCGccggacccGCUCGCCGgCCGGCcCGGCGc -3'
miRNA:   3'- -CGCGCa-------UGAGCGGCaGGCCGaGUUGC- -5'
24215 3' -57.1 NC_005263.2 + 37591 0.71 0.34933
Target:  5'- cGUGCGUcaGCUCGCCGacgcgCUGGUuuaUCAGCc -3'
miRNA:   3'- -CGCGCA--UGAGCGGCa----GGCCG---AGUUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.