miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24215 3' -57.1 NC_005263.2 + 864 0.73 0.267093
Target:  5'- -aGCGUACcCGUCGUgCCGGC-CGGCGc -3'
miRNA:   3'- cgCGCAUGaGCGGCA-GGCCGaGUUGC- -5'
24215 3' -57.1 NC_005263.2 + 897 0.71 0.325227
Target:  5'- aGCGCGgcGgUCGCCG-CCGGCggguuacucgUCGACGc -3'
miRNA:   3'- -CGCGCa-UgAGCGGCaGGCCG----------AGUUGC- -5'
24215 3' -57.1 NC_005263.2 + 1924 0.67 0.528778
Target:  5'- cGCGCGUcugcACgagcgCGCCGgcaCCGGCgacgcCGGCa -3'
miRNA:   3'- -CGCGCA----UGa----GCGGCa--GGCCGa----GUUGc -5'
24215 3' -57.1 NC_005263.2 + 2635 0.66 0.592618
Target:  5'- cGCGCGguucaucgcGCUUGCCGgcguaUCGGCggCGACa -3'
miRNA:   3'- -CGCGCa--------UGAGCGGCa----GGCCGa-GUUGc -5'
24215 3' -57.1 NC_005263.2 + 5793 0.7 0.401243
Target:  5'- aCGCGccGCUgCGCCGUCuCGaaguGCUCGACGu -3'
miRNA:   3'- cGCGCa-UGA-GCGGCAG-GC----CGAGUUGC- -5'
24215 3' -57.1 NC_005263.2 + 6147 0.7 0.392255
Target:  5'- cCGCagccCUCGCUGUCCGGCUCc--- -3'
miRNA:   3'- cGCGcau-GAGCGGCAGGCCGAGuugc -5'
24215 3' -57.1 NC_005263.2 + 6421 0.7 0.401243
Target:  5'- cCGCGUACggcCGCaGUCCGcGCcCGACGa -3'
miRNA:   3'- cGCGCAUGa--GCGgCAGGC-CGaGUUGC- -5'
24215 3' -57.1 NC_005263.2 + 6748 0.66 0.592618
Target:  5'- cGCGCGUcacguccaucGCgCGCCGggCGaGCUCGGCc -3'
miRNA:   3'- -CGCGCA----------UGaGCGGCagGC-CGAGUUGc -5'
24215 3' -57.1 NC_005263.2 + 8521 0.69 0.44808
Target:  5'- aCGUGgcgACcuUCGUCGU-CGGCUCGGCGg -3'
miRNA:   3'- cGCGCa--UG--AGCGGCAgGCCGAGUUGC- -5'
24215 3' -57.1 NC_005263.2 + 8808 0.67 0.560447
Target:  5'- cGCGCGcGCaugCGCCuG-CCGGCcgcUCGGCGu -3'
miRNA:   3'- -CGCGCaUGa--GCGG-CaGGCCG---AGUUGC- -5'
24215 3' -57.1 NC_005263.2 + 9015 1.11 0.00046
Target:  5'- cGCGCGUACUCGCCGUCCGGCUCAACGa -3'
miRNA:   3'- -CGCGCAUGAGCGGCAGGCCGAGUUGC- -5'
24215 3' -57.1 NC_005263.2 + 9887 0.68 0.467647
Target:  5'- gGCGCuuucaUGCUCGUCGUC-GGCgcgCGGCGu -3'
miRNA:   3'- -CGCGc----AUGAGCGGCAGgCCGa--GUUGC- -5'
24215 3' -57.1 NC_005263.2 + 9975 0.81 0.07695
Target:  5'- uGCGgGUGCgcaCGCCGUCCGGUUCGcCGu -3'
miRNA:   3'- -CGCgCAUGa--GCGGCAGGCCGAGUuGC- -5'
24215 3' -57.1 NC_005263.2 + 10550 0.67 0.539267
Target:  5'- cGCGgGUugUCgGCCGUCU-GCgCGACGu -3'
miRNA:   3'- -CGCgCAugAG-CGGCAGGcCGaGUUGC- -5'
24215 3' -57.1 NC_005263.2 + 11011 0.67 0.571125
Target:  5'- gGCGCGaaaUGCUCG--GUUCGGCUCAGg- -3'
miRNA:   3'- -CGCGC---AUGAGCggCAGGCCGAGUUgc -5'
24215 3' -57.1 NC_005263.2 + 11180 0.68 0.487644
Target:  5'- aGCGCGU----GCCGUCCGGUaUAGCc -3'
miRNA:   3'- -CGCGCAugagCGGCAGGCCGaGUUGc -5'
24215 3' -57.1 NC_005263.2 + 11537 0.7 0.382521
Target:  5'- gGCGCGgu-UCGUCGUcaccuugCCGcGCUCGACGa -3'
miRNA:   3'- -CGCGCaugAGCGGCA-------GGC-CGAGUUGC- -5'
24215 3' -57.1 NC_005263.2 + 11808 0.69 0.438469
Target:  5'- uCGCGUG-UCGCUgcauGUCgUGGCUCGGCGa -3'
miRNA:   3'- cGCGCAUgAGCGG----CAG-GCCGAGUUGC- -5'
24215 3' -57.1 NC_005263.2 + 12237 0.76 0.158293
Target:  5'- uGCgGUGUGCUCGUCGUUCaGUUCGACGu -3'
miRNA:   3'- -CG-CGCAUGAGCGGCAGGcCGAGUUGC- -5'
24215 3' -57.1 NC_005263.2 + 12304 0.69 0.41036
Target:  5'- uCGuCGUACUUGCCGagCGGCgcCAGCa -3'
miRNA:   3'- cGC-GCAUGAGCGGCagGCCGa-GUUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.