miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24215 5' -56.6 NC_005263.2 + 9050 1.08 0.000601
Target:  5'- uUUCGCCUCGGCGAACAGCUGUAGCGCc -3'
miRNA:   3'- -AAGCGGAGCCGCUUGUCGACAUCGCG- -5'
24215 5' -56.6 NC_005263.2 + 14154 0.76 0.147209
Target:  5'- -cCGCCUUGGCGAcuucgggccgGCGGCcgGUGuGCGCg -3'
miRNA:   3'- aaGCGGAGCCGCU----------UGUCGa-CAU-CGCG- -5'
24215 5' -56.6 NC_005263.2 + 26641 0.74 0.18877
Target:  5'- aUUUGCCagUGGCGccGCAGCgGUGGCGCu -3'
miRNA:   3'- -AAGCGGa-GCCGCu-UGUCGaCAUCGCG- -5'
24215 5' -56.6 NC_005263.2 + 29226 0.74 0.199311
Target:  5'- aUUUGCCgUCGGCGcGCAGC-GgcGCGCc -3'
miRNA:   3'- -AAGCGG-AGCCGCuUGUCGaCauCGCG- -5'
24215 5' -56.6 NC_005263.2 + 12546 0.73 0.221935
Target:  5'- gUUCGCggCGGCcGGCGGCgccGUAGCGCc -3'
miRNA:   3'- -AAGCGgaGCCGcUUGUCGa--CAUCGCG- -5'
24215 5' -56.6 NC_005263.2 + 17742 0.73 0.227923
Target:  5'- cUCGCaCUCGGCGccGGCGGC---AGCGCg -3'
miRNA:   3'- aAGCG-GAGCCGC--UUGUCGacaUCGCG- -5'
24215 5' -56.6 NC_005263.2 + 18871 0.73 0.234046
Target:  5'- -gUGCCUCGGCGcGCcGCUGc-GCGCc -3'
miRNA:   3'- aaGCGGAGCCGCuUGuCGACauCGCG- -5'
24215 5' -56.6 NC_005263.2 + 45160 0.72 0.25325
Target:  5'- cUUgGCUUCGGCG-GCGGCgaUGGCGCa -3'
miRNA:   3'- -AAgCGGAGCCGCuUGUCGacAUCGCG- -5'
24215 5' -56.6 NC_005263.2 + 17630 0.72 0.27373
Target:  5'- gUCGCCagGGCGc-CGGaUGUGGCGCa -3'
miRNA:   3'- aAGCGGagCCGCuuGUCgACAUCGCG- -5'
24215 5' -56.6 NC_005263.2 + 24936 0.71 0.288108
Target:  5'- gUUCGgUggCGGCGGACGGCgGU-GCGCg -3'
miRNA:   3'- -AAGCgGa-GCCGCUUGUCGaCAuCGCG- -5'
24215 5' -56.6 NC_005263.2 + 26532 0.71 0.303073
Target:  5'- -aCGCCggCGGCGAGCAcGC---GGCGCu -3'
miRNA:   3'- aaGCGGa-GCCGCUUGU-CGacaUCGCG- -5'
24215 5' -56.6 NC_005263.2 + 22491 0.71 0.318629
Target:  5'- gUCGCCggCGGCGGccgGCGGCgGUucGGCGg -3'
miRNA:   3'- aAGCGGa-GCCGCU---UGUCGaCA--UCGCg -5'
24215 5' -56.6 NC_005263.2 + 29960 0.71 0.318629
Target:  5'- aUCgGCCUgcgcagCGGCGGGCAGCgcgaucAGCGCg -3'
miRNA:   3'- aAG-CGGA------GCCGCUUGUCGaca---UCGCG- -5'
24215 5' -56.6 NC_005263.2 + 10397 0.7 0.360105
Target:  5'- --gGCCggcCGGCGAGCGGgUccGGCGCg -3'
miRNA:   3'- aagCGGa--GCCGCUUGUCgAcaUCGCG- -5'
24215 5' -56.6 NC_005263.2 + 47724 0.69 0.378614
Target:  5'- -aCGCgCUCGGCaauucugucggccuGCAGCUGUucaaAGCGCc -3'
miRNA:   3'- aaGCG-GAGCCGcu------------UGUCGACA----UCGCG- -5'
24215 5' -56.6 NC_005263.2 + 27144 0.69 0.395902
Target:  5'- -cCGCgUCGGCGAuguccgACAGCgc--GCGCg -3'
miRNA:   3'- aaGCGgAGCCGCU------UGUCGacauCGCG- -5'
24215 5' -56.6 NC_005263.2 + 29886 0.69 0.405203
Target:  5'- gUCGCg-CGGcCGGACAGCgUGUGauacuGCGCg -3'
miRNA:   3'- aAGCGgaGCC-GCUUGUCG-ACAU-----CGCG- -5'
24215 5' -56.6 NC_005263.2 + 7120 0.69 0.414641
Target:  5'- uUUCGCCUgcCGuGCGAcCGaCUGUGGCGUc -3'
miRNA:   3'- -AAGCGGA--GC-CGCUuGUcGACAUCGCG- -5'
24215 5' -56.6 NC_005263.2 + 19387 0.68 0.424212
Target:  5'- gUCaGCCUCGGCGGcgcgcaguACGGCaac-GCGCg -3'
miRNA:   3'- aAG-CGGAGCCGCU--------UGUCGacauCGCG- -5'
24215 5' -56.6 NC_005263.2 + 16596 0.68 0.424212
Target:  5'- gUUCGCCgggcucgCGcGCGAGCAGCaGcucGCGCc -3'
miRNA:   3'- -AAGCGGa------GC-CGCUUGUCGaCau-CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.