miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24215 5' -56.6 NC_005263.2 + 3394 0.68 0.428077
Target:  5'- gUCGCCgucguugcgggcacuUCGGUaaaGAACuGCUGcGGCGCc -3'
miRNA:   3'- aAGCGG---------------AGCCG---CUUGuCGACaUCGCG- -5'
24215 5' -56.6 NC_005263.2 + 7120 0.69 0.414641
Target:  5'- uUUCGCCUgcCGuGCGAcCGaCUGUGGCGUc -3'
miRNA:   3'- -AAGCGGA--GC-CGCUuGUcGACAUCGCG- -5'
24215 5' -56.6 NC_005263.2 + 7220 0.66 0.592082
Target:  5'- aUCGCC--GGCGAcCAGaaGgcGCGCg -3'
miRNA:   3'- aAGCGGagCCGCUuGUCgaCauCGCG- -5'
24215 5' -56.6 NC_005263.2 + 7431 0.68 0.463772
Target:  5'- -cCGCUUCGGCcuGAuacCAGC-GUGGCGUc -3'
miRNA:   3'- aaGCGGAGCCG--CUu--GUCGaCAUCGCG- -5'
24215 5' -56.6 NC_005263.2 + 9050 1.08 0.000601
Target:  5'- uUUCGCCUCGGCGAACAGCUGUAGCGCc -3'
miRNA:   3'- -AAGCGGAGCCGCUUGUCGACAUCGCG- -5'
24215 5' -56.6 NC_005263.2 + 10397 0.7 0.360105
Target:  5'- --gGCCggcCGGCGAGCGGgUccGGCGCg -3'
miRNA:   3'- aagCGGa--GCCGCUUGUCgAcaUCGCG- -5'
24215 5' -56.6 NC_005263.2 + 10518 0.67 0.515778
Target:  5'- -gCGCgUCGGCGAGCugacGCacgaGcAGCGCa -3'
miRNA:   3'- aaGCGgAGCCGCUUGu---CGa---CaUCGCG- -5'
24215 5' -56.6 NC_005263.2 + 11957 0.68 0.463772
Target:  5'- gUUCGCCUCGaGCGcGC-GCcGUAcuuGCGCu -3'
miRNA:   3'- -AAGCGGAGC-CGCuUGuCGaCAU---CGCG- -5'
24215 5' -56.6 NC_005263.2 + 12546 0.73 0.221935
Target:  5'- gUUCGCggCGGCcGGCGGCgccGUAGCGCc -3'
miRNA:   3'- -AAGCGgaGCCGcUUGUCGa--CAUCGCG- -5'
24215 5' -56.6 NC_005263.2 + 14154 0.76 0.147209
Target:  5'- -cCGCCUUGGCGAcuucgggccgGCGGCcgGUGuGCGCg -3'
miRNA:   3'- aaGCGGAGCCGCU----------UGUCGa-CAU-CGCG- -5'
24215 5' -56.6 NC_005263.2 + 16408 0.67 0.515778
Target:  5'- aUCGCgggugcgguaCUCGGCGu-CGGCgcUGGCGCg -3'
miRNA:   3'- aAGCG----------GAGCCGCuuGUCGacAUCGCG- -5'
24215 5' -56.6 NC_005263.2 + 16596 0.68 0.424212
Target:  5'- gUUCGCCgggcucgCGcGCGAGCAGCaGcucGCGCc -3'
miRNA:   3'- -AAGCGGa------GC-CGCUUGUCGaCau-CGCG- -5'
24215 5' -56.6 NC_005263.2 + 16979 0.66 0.54809
Target:  5'- -gCGUUUCGGCGAAUAcCUG-AGCGa -3'
miRNA:   3'- aaGCGGAGCCGCUUGUcGACaUCGCg -5'
24215 5' -56.6 NC_005263.2 + 17408 0.67 0.515778
Target:  5'- -gCGCCU-GGCGGGCGG-UGUcgcaGGUGCa -3'
miRNA:   3'- aaGCGGAgCCGCUUGUCgACA----UCGCG- -5'
24215 5' -56.6 NC_005263.2 + 17630 0.72 0.27373
Target:  5'- gUCGCCagGGCGc-CGGaUGUGGCGCa -3'
miRNA:   3'- aAGCGGagCCGCuuGUCgACAUCGCG- -5'
24215 5' -56.6 NC_005263.2 + 17742 0.73 0.227923
Target:  5'- cUCGCaCUCGGCGccGGCGGC---AGCGCg -3'
miRNA:   3'- aAGCG-GAGCCGC--UUGUCGacaUCGCG- -5'
24215 5' -56.6 NC_005263.2 + 18610 0.68 0.453698
Target:  5'- -aCGCCgcagCGGCGuucGCGGCagGUGGCa- -3'
miRNA:   3'- aaGCGGa---GCCGCu--UGUCGa-CAUCGcg -5'
24215 5' -56.6 NC_005263.2 + 18871 0.73 0.234046
Target:  5'- -gUGCCUCGGCGcGCcGCUGc-GCGCc -3'
miRNA:   3'- aaGCGGAGCCGCuUGuCGACauCGCG- -5'
24215 5' -56.6 NC_005263.2 + 19387 0.68 0.424212
Target:  5'- gUCaGCCUCGGCGGcgcgcaguACGGCaac-GCGCg -3'
miRNA:   3'- aAG-CGGAGCCGCU--------UGUCGacauCGCG- -5'
24215 5' -56.6 NC_005263.2 + 19962 0.67 0.525396
Target:  5'- cUCGCgugCUCGGCGcuGGCAGC-GUgcaagacGGCGCc -3'
miRNA:   3'- aAGCG---GAGCCGC--UUGUCGaCA-------UCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.