miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24215 5' -56.6 NC_005263.2 + 14154 0.76 0.147209
Target:  5'- -cCGCCUUGGCGAcuucgggccgGCGGCcgGUGuGCGCg -3'
miRNA:   3'- aaGCGGAGCCGCU----------UGUCGa-CAU-CGCG- -5'
24215 5' -56.6 NC_005263.2 + 38706 0.67 0.515778
Target:  5'- gUCGUacUUCGuCGAGCAGCUGgccgccGCGCu -3'
miRNA:   3'- aAGCG--GAGCcGCUUGUCGACau----CGCG- -5'
24215 5' -56.6 NC_005263.2 + 27963 0.66 0.54809
Target:  5'- -gUGCC-CGGCGcGACGGCcGUAccgucGCGCu -3'
miRNA:   3'- aaGCGGaGCCGC-UUGUCGaCAU-----CGCG- -5'
24215 5' -56.6 NC_005263.2 + 39046 0.66 0.579906
Target:  5'- -aCGUCgaGGCGcuACAGCUGUucgccgaggcgaaAGCGCg -3'
miRNA:   3'- aaGCGGagCCGCu-UGUCGACA-------------UCGCG- -5'
24215 5' -56.6 NC_005263.2 + 45160 0.72 0.25325
Target:  5'- cUUgGCUUCGGCG-GCGGCgaUGGCGCa -3'
miRNA:   3'- -AAgCGGAGCCGCuUGUCGacAUCGCG- -5'
24215 5' -56.6 NC_005263.2 + 17630 0.72 0.27373
Target:  5'- gUCGCCagGGCGc-CGGaUGUGGCGCa -3'
miRNA:   3'- aAGCGGagCCGCuuGUCgACAUCGCG- -5'
24215 5' -56.6 NC_005263.2 + 22491 0.71 0.318629
Target:  5'- gUCGCCggCGGCGGccgGCGGCgGUucGGCGg -3'
miRNA:   3'- aAGCGGa-GCCGCU---UGUCGaCA--UCGCg -5'
24215 5' -56.6 NC_005263.2 + 29886 0.69 0.405203
Target:  5'- gUCGCg-CGGcCGGACAGCgUGUGauacuGCGCg -3'
miRNA:   3'- aAGCGgaGCC-GCUUGUCG-ACAU-----CGCG- -5'
24215 5' -56.6 NC_005263.2 + 18610 0.68 0.453698
Target:  5'- -aCGCCgcagCGGCGuucGCGGCagGUGGCa- -3'
miRNA:   3'- aaGCGGa---GCCGCu--UGUCGa-CAUCGcg -5'
24215 5' -56.6 NC_005263.2 + 43250 0.67 0.494669
Target:  5'- -aCGCgCUCGGCGuAACgcucgauuGGCUGUGcGgGCg -3'
miRNA:   3'- aaGCG-GAGCCGC-UUG--------UCGACAU-CgCG- -5'
24215 5' -56.6 NC_005263.2 + 26055 0.67 0.484262
Target:  5'- aUCGUCgCGGC-AACAGCcggGUuGCGCg -3'
miRNA:   3'- aAGCGGaGCCGcUUGUCGa--CAuCGCG- -5'
24215 5' -56.6 NC_005263.2 + 32245 0.68 0.447711
Target:  5'- gUUCGCCUgcaucugcugaaucgCGGCGAGCcacGCga-AGCGCg -3'
miRNA:   3'- -AAGCGGA---------------GCCGCUUGu--CGacaUCGCG- -5'
24215 5' -56.6 NC_005263.2 + 26641 0.74 0.18877
Target:  5'- aUUUGCCagUGGCGccGCAGCgGUGGCGCu -3'
miRNA:   3'- -AAGCGGa-GCCGCu-UGUCGaCAUCGCG- -5'
24215 5' -56.6 NC_005263.2 + 22100 0.67 0.488412
Target:  5'- --aGCCauUCGGCGAagugccgcgcgagugGCAGCUGaaAGCGUu -3'
miRNA:   3'- aagCGG--AGCCGCU---------------UGUCGACa-UCGCG- -5'
24215 5' -56.6 NC_005263.2 + 29226 0.74 0.199311
Target:  5'- aUUUGCCgUCGGCGcGCAGC-GgcGCGCc -3'
miRNA:   3'- -AAGCGG-AGCCGCuUGUCGaCauCGCG- -5'
24215 5' -56.6 NC_005263.2 + 3394 0.68 0.428077
Target:  5'- gUCGCCgucguugcgggcacuUCGGUaaaGAACuGCUGcGGCGCc -3'
miRNA:   3'- aAGCGG---------------AGCCG---CUUGuCGACaUCGCG- -5'
24215 5' -56.6 NC_005263.2 + 31329 0.67 0.493623
Target:  5'- -aCGUC-CGGCGAuacgccgGCGGCcGUcaGGCGCg -3'
miRNA:   3'- aaGCGGaGCCGCU-------UGUCGaCA--UCGCG- -5'
24215 5' -56.6 NC_005263.2 + 19962 0.67 0.525396
Target:  5'- cUCGCgugCUCGGCGcuGGCAGC-GUgcaagacGGCGCc -3'
miRNA:   3'- aAGCG---GAGCCGC--UUGUCGaCA-------UCGCG- -5'
24215 5' -56.6 NC_005263.2 + 12546 0.73 0.221935
Target:  5'- gUUCGCggCGGCcGGCGGCgccGUAGCGCc -3'
miRNA:   3'- -AAGCGgaGCCGcUUGUCGa--CAUCGCG- -5'
24215 5' -56.6 NC_005263.2 + 26532 0.71 0.303073
Target:  5'- -aCGCCggCGGCGAGCAcGC---GGCGCu -3'
miRNA:   3'- aaGCGGa-GCCGCUUGU-CGacaUCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.