miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24221 5' -61.2 NC_005263.2 + 6637 1.1 0.000192
Target:  5'- cGCCCGCGUCGAGCAGCGCCUGCUCGAu -3'
miRNA:   3'- -CGGGCGCAGCUCGUCGCGGACGAGCU- -5'
24221 5' -61.2 NC_005263.2 + 18741 0.76 0.079411
Target:  5'- cGUCgGCGcCGGGUuaccGGCGCCUGCUCGc -3'
miRNA:   3'- -CGGgCGCaGCUCG----UCGCGGACGAGCu -5'
24221 5' -61.2 NC_005263.2 + 18913 0.75 0.088744
Target:  5'- gGCCUGCGUCGAGCGugaccGCGCggcacgagcGCUCGAg -3'
miRNA:   3'- -CGGGCGCAGCUCGU-----CGCGga-------CGAGCU- -5'
24221 5' -61.2 NC_005263.2 + 38036 0.75 0.093793
Target:  5'- uGCCCGCGUCGcucGGCuuccaguGCGCCgacccGUUCGAu -3'
miRNA:   3'- -CGGGCGCAGC---UCGu------CGCGGa----CGAGCU- -5'
24221 5' -61.2 NC_005263.2 + 5154 0.74 0.101879
Target:  5'- cGCCCGUguuGUCGAGCAGCGCg-GUUUGc -3'
miRNA:   3'- -CGGGCG---CAGCUCGUCGCGgaCGAGCu -5'
24221 5' -61.2 NC_005263.2 + 30526 0.74 0.101879
Target:  5'- cCCCGCugcgCGAGCAGCucgauGCgCUGCUCGAc -3'
miRNA:   3'- cGGGCGca--GCUCGUCG-----CG-GACGAGCU- -5'
24221 5' -61.2 NC_005263.2 + 8951 0.74 0.107631
Target:  5'- aGCCCGUGUCGAGCAaCGUC-GC-CGAc -3'
miRNA:   3'- -CGGGCGCAGCUCGUcGCGGaCGaGCU- -5'
24221 5' -61.2 NC_005263.2 + 22503 0.74 0.107631
Target:  5'- gGCCgGCGgCGguucGGCGGCugcgGCCUGCUCGAu -3'
miRNA:   3'- -CGGgCGCaGC----UCGUCG----CGGACGAGCU- -5'
24221 5' -61.2 NC_005263.2 + 12689 0.73 0.120058
Target:  5'- cGUUCGCGUCGAGCuugccggcguaGGgGCCguccgGCUCGGu -3'
miRNA:   3'- -CGGGCGCAGCUCG-----------UCgCGGa----CGAGCU- -5'
24221 5' -61.2 NC_005263.2 + 31547 0.72 0.148601
Target:  5'- gGCCUugGCGUCGcugcccaGGCGGCGCgCcgUGCUCGAc -3'
miRNA:   3'- -CGGG--CGCAGC-------UCGUCGCG-G--ACGAGCU- -5'
24221 5' -61.2 NC_005263.2 + 21059 0.72 0.148999
Target:  5'- uGCCCGa--CGGGCGGCcgcgcauCCUGCUCGAa -3'
miRNA:   3'- -CGGGCgcaGCUCGUCGc------GGACGAGCU- -5'
24221 5' -61.2 NC_005263.2 + 14051 0.72 0.152626
Target:  5'- gGCgCCGCGUCGAGCGcauugagcgcgccGCGCCgGCccaugUCGGc -3'
miRNA:   3'- -CG-GGCGCAGCUCGU-------------CGCGGaCG-----AGCU- -5'
24221 5' -61.2 NC_005263.2 + 11956 0.72 0.153034
Target:  5'- cGUUCGCcUCGAGCGcGCGCCguacuugcGCUCGAu -3'
miRNA:   3'- -CGGGCGcAGCUCGU-CGCGGa-------CGAGCU- -5'
24221 5' -61.2 NC_005263.2 + 8103 0.71 0.170183
Target:  5'- cGCCaGCaccucauuaGUCGGGCacucuucgAGCGCUUGCUCGAu -3'
miRNA:   3'- -CGGgCG---------CAGCUCG--------UCGCGGACGAGCU- -5'
24221 5' -61.2 NC_005263.2 + 41453 0.71 0.188537
Target:  5'- aGCaCGCGcauaugaUCGAGCAG-GCgCUGCUCGAc -3'
miRNA:   3'- -CGgGCGC-------AGCUCGUCgCG-GACGAGCU- -5'
24221 5' -61.2 NC_005263.2 + 28171 0.7 0.193516
Target:  5'- uGCCCGaCGUCGAauagcGCGGCGCCUucugcaugccguuGC-CGGc -3'
miRNA:   3'- -CGGGC-GCAGCU-----CGUCGCGGA-------------CGaGCU- -5'
24221 5' -61.2 NC_005263.2 + 19416 0.7 0.19861
Target:  5'- cGCgCGCGUUGAGguGUucggcguGCC-GCUCGAu -3'
miRNA:   3'- -CGgGCGCAGCUCguCG-------CGGaCGAGCU- -5'
24221 5' -61.2 NC_005263.2 + 9181 0.7 0.20382
Target:  5'- uGCgCGaCGUCGAGCucggcgcGGCGCCcggcuUGCUCGu -3'
miRNA:   3'- -CGgGC-GCAGCUCG-------UCGCGG-----ACGAGCu -5'
24221 5' -61.2 NC_005263.2 + 21991 0.7 0.204348
Target:  5'- aCCCGCugacuUCGAGCGGCGCgUaccaggacgcGCUCGGc -3'
miRNA:   3'- cGGGCGc----AGCUCGUCGCGgA----------CGAGCU- -5'
24221 5' -61.2 NC_005263.2 + 27700 0.7 0.209149
Target:  5'- cGCCgGCGcCG-GCGGCcgcauagGCUUGCUCGGu -3'
miRNA:   3'- -CGGgCGCaGCuCGUCG-------CGGACGAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.