miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24221 5' -61.2 NC_005263.2 + 651 0.67 0.338559
Target:  5'- cGCCCGUGaaCGugaaacgcaaggcacGGUAGUGCCcgUGCUCGGu -3'
miRNA:   3'- -CGGGCGCa-GC---------------UCGUCGCGG--ACGAGCU- -5'
24221 5' -61.2 NC_005263.2 + 950 0.67 0.335395
Target:  5'- aCCCGCGagCGgcgacguagcGGCGGuCGCCUGCgcgUCGGa -3'
miRNA:   3'- cGGGCGCa-GC----------UCGUC-GCGGACG---AGCU- -5'
24221 5' -61.2 NC_005263.2 + 1517 0.66 0.393858
Target:  5'- cGCaCgGCGUCGAugaGCAGCuuguGCC-GUUCGAu -3'
miRNA:   3'- -CG-GgCGCAGCU---CGUCG----CGGaCGAGCU- -5'
24221 5' -61.2 NC_005263.2 + 1921 0.66 0.359653
Target:  5'- aGCCgCGCGUcugcaCGAGC-GCGCCgGCaccggCGAc -3'
miRNA:   3'- -CGG-GCGCA-----GCUCGuCGCGGaCGa----GCU- -5'
24221 5' -61.2 NC_005263.2 + 2316 0.66 0.379065
Target:  5'- cGCCCGCGUugaacuggcggaacgCGAGCAccgugcggccguuGCGCa-GCUgGAa -3'
miRNA:   3'- -CGGGCGCA---------------GCUCGU-------------CGCGgaCGAgCU- -5'
24221 5' -61.2 NC_005263.2 + 2637 0.66 0.385111
Target:  5'- -aUCGCGaUCG-GCAcguucGCGCCggGCUCGAg -3'
miRNA:   3'- cgGGCGC-AGCuCGU-----CGCGGa-CGAGCU- -5'
24221 5' -61.2 NC_005263.2 + 3224 0.66 0.351433
Target:  5'- cGCCCGCcccgaugacGcCGGGCAGCaUCUGCaCGAu -3'
miRNA:   3'- -CGGGCG---------CaGCUCGUCGcGGACGaGCU- -5'
24221 5' -61.2 NC_005263.2 + 3758 0.67 0.335395
Target:  5'- uGCUCGCGcgCGGGCAGCGgCacggUGUUCu- -3'
miRNA:   3'- -CGGGCGCa-GCUCGUCGCgG----ACGAGcu -5'
24221 5' -61.2 NC_005263.2 + 3988 0.66 0.385111
Target:  5'- gGCgCCGcCGcCGAGCAGCGCacCUGaC-CGAu -3'
miRNA:   3'- -CG-GGC-GCaGCUCGUCGCG--GAC-GaGCU- -5'
24221 5' -61.2 NC_005263.2 + 4171 0.66 0.393858
Target:  5'- cGCgCCGCGcUCGugcugcAGCGGCGUgUGCUUc- -3'
miRNA:   3'- -CG-GGCGC-AGC------UCGUCGCGgACGAGcu -5'
24221 5' -61.2 NC_005263.2 + 4212 0.7 0.222997
Target:  5'- cGCgCGCGUCGAcgggucgucgagguaGCGGCcuaGCCcgUGCUCGGu -3'
miRNA:   3'- -CGgGCGCAGCU---------------CGUCG---CGG--ACGAGCU- -5'
24221 5' -61.2 NC_005263.2 + 5073 0.68 0.276661
Target:  5'- cGCgCCGCGUCaGGugccaacccgcGCAGUGCUUGCaCGAg -3'
miRNA:   3'- -CG-GGCGCAG-CU-----------CGUCGCGGACGaGCU- -5'
24221 5' -61.2 NC_005263.2 + 5154 0.74 0.101879
Target:  5'- cGCCCGUguuGUCGAGCAGCGCg-GUUUGc -3'
miRNA:   3'- -CGGGCG---CAGCUCGUCGCGgaCGAGCu -5'
24221 5' -61.2 NC_005263.2 + 6388 0.69 0.256852
Target:  5'- cGCCCGCGUCGAGUA-CGaggaUGUUCu- -3'
miRNA:   3'- -CGGGCGCAGCUCGUcGCgg--ACGAGcu -5'
24221 5' -61.2 NC_005263.2 + 6637 1.1 0.000192
Target:  5'- cGCCCGCGUCGAGCAGCGCCUGCUCGAu -3'
miRNA:   3'- -CGGGCGCAGCUCGUCGCGGACGAGCU- -5'
24221 5' -61.2 NC_005263.2 + 8103 0.71 0.170183
Target:  5'- cGCCaGCaccucauuaGUCGGGCacucuucgAGCGCUUGCUCGAu -3'
miRNA:   3'- -CGGgCG---------CAGCUCG--------UCGCGGACGAGCU- -5'
24221 5' -61.2 NC_005263.2 + 8280 0.69 0.256852
Target:  5'- gGCCacaGCG-CGAGCGGCGUC-GgUCGGa -3'
miRNA:   3'- -CGGg--CGCaGCUCGUCGCGGaCgAGCU- -5'
24221 5' -61.2 NC_005263.2 + 8799 0.67 0.327579
Target:  5'- aCCUGCGaUCGcgcgcGCAuGCGCCUGC-CGGc -3'
miRNA:   3'- cGGGCGC-AGCu----CGU-CGCGGACGaGCU- -5'
24221 5' -61.2 NC_005263.2 + 8951 0.74 0.107631
Target:  5'- aGCCCGUGUCGAGCAaCGUC-GC-CGAc -3'
miRNA:   3'- -CGGGCGCAGCUCGUcGCGGaCGaGCU- -5'
24221 5' -61.2 NC_005263.2 + 9181 0.7 0.20382
Target:  5'- uGCgCGaCGUCGAGCucggcgcGGCGCCcggcuUGCUCGu -3'
miRNA:   3'- -CGgGC-GCAGCUCG-------UCGCGG-----ACGAGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.