Results 1 - 20 of 75 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24221 | 5' | -61.2 | NC_005263.2 | + | 18741 | 0.76 | 0.079411 |
Target: 5'- cGUCgGCGcCGGGUuaccGGCGCCUGCUCGc -3' miRNA: 3'- -CGGgCGCaGCUCG----UCGCGGACGAGCu -5' |
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24221 | 5' | -61.2 | NC_005263.2 | + | 37758 | 0.68 | 0.26267 |
Target: 5'- uGCUCGaUGUCG-GCAagcugccGCGCCUGCgCGAg -3' miRNA: 3'- -CGGGC-GCAGCuCGU-------CGCGGACGaGCU- -5' |
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24221 | 5' | -61.2 | NC_005263.2 | + | 38259 | 0.68 | 0.269925 |
Target: 5'- cCCCGaGUCGAGCAagcGCGCCgcgccGUUCGu -3' miRNA: 3'- cGGGCgCAGCUCGU---CGCGGa----CGAGCu -5' |
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24221 | 5' | -61.2 | NC_005263.2 | + | 4171 | 0.66 | 0.393858 |
Target: 5'- cGCgCCGCGcUCGugcugcAGCGGCGUgUGCUUc- -3' miRNA: 3'- -CG-GGCGC-AGC------UCGUCGCGgACGAGcu -5' |
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24221 | 5' | -61.2 | NC_005263.2 | + | 22503 | 0.74 | 0.107631 |
Target: 5'- gGCCgGCGgCGguucGGCGGCugcgGCCUGCUCGAu -3' miRNA: 3'- -CGGgCGCaGC----UCGUCG----CGGACGAGCU- -5' |
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24221 | 5' | -61.2 | NC_005263.2 | + | 12689 | 0.73 | 0.120058 |
Target: 5'- cGUUCGCGUCGAGCuugccggcguaGGgGCCguccgGCUCGGu -3' miRNA: 3'- -CGGGCGCAGCUCG-----------UCgCGGa----CGAGCU- -5' |
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24221 | 5' | -61.2 | NC_005263.2 | + | 21059 | 0.72 | 0.148999 |
Target: 5'- uGCCCGa--CGGGCGGCcgcgcauCCUGCUCGAa -3' miRNA: 3'- -CGGGCgcaGCUCGUCGc------GGACGAGCU- -5' |
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24221 | 5' | -61.2 | NC_005263.2 | + | 14051 | 0.72 | 0.152626 |
Target: 5'- gGCgCCGCGUCGAGCGcauugagcgcgccGCGCCgGCccaugUCGGc -3' miRNA: 3'- -CG-GGCGCAGCUCGU-------------CGCGGaCG-----AGCU- -5' |
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24221 | 5' | -61.2 | NC_005263.2 | + | 28171 | 0.7 | 0.193516 |
Target: 5'- uGCCCGaCGUCGAauagcGCGGCGCCUucugcaugccguuGC-CGGc -3' miRNA: 3'- -CGGGC-GCAGCU-----CGUCGCGGA-------------CGaGCU- -5' |
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24221 | 5' | -61.2 | NC_005263.2 | + | 31624 | 0.69 | 0.238219 |
Target: 5'- cGgCCGCG-CGGcGCAGCGCC-GuCUCGGu -3' miRNA: 3'- -CgGGCGCaGCU-CGUCGCGGaC-GAGCU- -5' |
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24221 | 5' | -61.2 | NC_005263.2 | + | 44358 | 0.69 | 0.226435 |
Target: 5'- uGCCCGCGcgCGAGCAgGCGUac-UUCGAa -3' miRNA: 3'- -CGGGCGCa-GCUCGU-CGCGgacGAGCU- -5' |
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24221 | 5' | -61.2 | NC_005263.2 | + | 41453 | 0.71 | 0.188537 |
Target: 5'- aGCaCGCGcauaugaUCGAGCAG-GCgCUGCUCGAc -3' miRNA: 3'- -CGgGCGC-------AGCUCGUCgCG-GACGAGCU- -5' |
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24221 | 5' | -61.2 | NC_005263.2 | + | 38036 | 0.75 | 0.093793 |
Target: 5'- uGCCCGCGUCGcucGGCuuccaguGCGCCgacccGUUCGAu -3' miRNA: 3'- -CGGGCGCAGC---UCGu------CGCGGa----CGAGCU- -5' |
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24221 | 5' | -61.2 | NC_005263.2 | + | 33196 | 0.69 | 0.234631 |
Target: 5'- gGUUCGCGaUCGGucaggaaugccacguGCAGCaugagugcgGCCUGCUCGAg -3' miRNA: 3'- -CGGGCGC-AGCU---------------CGUCG---------CGGACGAGCU- -5' |
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24221 | 5' | -61.2 | NC_005263.2 | + | 5154 | 0.74 | 0.101879 |
Target: 5'- cGCCCGUguuGUCGAGCAGCGCg-GUUUGc -3' miRNA: 3'- -CGGGCG---CAGCUCGUCGCGgaCGAGCu -5' |
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24221 | 5' | -61.2 | NC_005263.2 | + | 11956 | 0.72 | 0.153034 |
Target: 5'- cGUUCGCcUCGAGCGcGCGCCguacuugcGCUCGAu -3' miRNA: 3'- -CGGGCGcAGCUCGU-CGCGGa-------CGAGCU- -5' |
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24221 | 5' | -61.2 | NC_005263.2 | + | 17567 | 0.69 | 0.238219 |
Target: 5'- ---gGaCGUCGAGCAGCGCaucgagCUGCUCGc -3' miRNA: 3'- cgggC-GCAGCUCGUCGCG------GACGAGCu -5' |
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24221 | 5' | -61.2 | NC_005263.2 | + | 26098 | 0.68 | 0.269925 |
Target: 5'- gGCCgagCGCGUCcuGGUAcGCGCC-GCUCGAa -3' miRNA: 3'- -CGG---GCGCAGc-UCGU-CGCGGaCGAGCU- -5' |
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24221 | 5' | -61.2 | NC_005263.2 | + | 8951 | 0.74 | 0.107631 |
Target: 5'- aGCCCGUGUCGAGCAaCGUC-GC-CGAc -3' miRNA: 3'- -CGGGCGCAGCUCGUcGCGGaCGaGCU- -5' |
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24221 | 5' | -61.2 | NC_005263.2 | + | 31547 | 0.72 | 0.148601 |
Target: 5'- gGCCUugGCGUCGcugcccaGGCGGCGCgCcgUGCUCGAc -3' miRNA: 3'- -CGGG--CGCAGC-------UCGUCGCG-G--ACGAGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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