miRNA display CGI


Results 1 - 20 of 33 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24230 3' -50.2 NC_005263.2 + 1209 0.66 0.947933
Target:  5'- gCgGUGcAACGccguGCGCAGcacGGCGCGGa -3'
miRNA:   3'- -GgCAC-UUGCacuuUGCGUU---CCGUGCC- -5'
24230 3' -50.2 NC_005263.2 + 3795 0.66 0.947933
Target:  5'- uCCGgcccGGCGU---GCGCGAGGCGCu- -3'
miRNA:   3'- -GGCac--UUGCAcuuUGCGUUCCGUGcc -5'
24230 3' -50.2 NC_005263.2 + 43985 0.66 0.943065
Target:  5'- gUCG-GAACGUGAAGCaGUAcGcGCGCGu -3'
miRNA:   3'- -GGCaCUUGCACUUUG-CGUuC-CGUGCc -5'
24230 3' -50.2 NC_005263.2 + 13222 0.66 0.937909
Target:  5'- gCGUGAGCGccu-GCGCGAGGUcCa- -3'
miRNA:   3'- gGCACUUGCacuuUGCGUUCCGuGcc -5'
24230 3' -50.2 NC_005263.2 + 21380 0.66 0.931903
Target:  5'- aCGUGAugGUGcgcuuCGCGcugccgcAGGC-CGGc -3'
miRNA:   3'- gGCACUugCACuuu--GCGU-------UCCGuGCC- -5'
24230 3' -50.2 NC_005263.2 + 29726 0.66 0.926727
Target:  5'- -gGUGcGCGUGAAGCaGCc--GCGCGGc -3'
miRNA:   3'- ggCACuUGCACUUUG-CGuucCGUGCC- -5'
24230 3' -50.2 NC_005263.2 + 27705 0.66 0.926727
Target:  5'- uUCGUGAaauuGCGccucGAAugGCGAGuuGUACGGu -3'
miRNA:   3'- -GGCACU----UGCa---CUUugCGUUC--CGUGCC- -5'
24230 3' -50.2 NC_005263.2 + 42558 0.67 0.907772
Target:  5'- gCGUGGggAUGUG-GGCGCA-GGCACa- -3'
miRNA:   3'- gGCACU--UGCACuUUGCGUuCCGUGcc -5'
24230 3' -50.2 NC_005263.2 + 42129 0.67 0.907772
Target:  5'- gUCGUGcugcgcgacgaGGCGUGu--CGCGAGGUGCGc -3'
miRNA:   3'- -GGCAC-----------UUGCACuuuGCGUUCCGUGCc -5'
24230 3' -50.2 NC_005263.2 + 42044 0.67 0.907096
Target:  5'- cCUGUcGGcgcGCGUGAAGCGCGccgccaacgaacgGGGCgugcucGCGGa -3'
miRNA:   3'- -GGCA-CU---UGCACUUUGCGU-------------UCCG------UGCC- -5'
24230 3' -50.2 NC_005263.2 + 5255 0.67 0.893699
Target:  5'- gCCGggucGAACGUGA--UGC--GGUACGGg -3'
miRNA:   3'- -GGCa---CUUGCACUuuGCGuuCCGUGCC- -5'
24230 3' -50.2 NC_005263.2 + 14007 0.68 0.87851
Target:  5'- ---cGAAC-UGAcGCGCGAGGCGCa- -3'
miRNA:   3'- ggcaCUUGcACUuUGCGUUCCGUGcc -5'
24230 3' -50.2 NC_005263.2 + 19156 0.68 0.87851
Target:  5'- gUCGUGAcCGUGcAucCGCc-GGCGCGGc -3'
miRNA:   3'- -GGCACUuGCAC-UuuGCGuuCCGUGCC- -5'
24230 3' -50.2 NC_005263.2 + 5404 0.68 0.862252
Target:  5'- aCGgcGGCGUGAcgauccAGCGCgAAGGCGCGa -3'
miRNA:   3'- gGCacUUGCACU------UUGCG-UUCCGUGCc -5'
24230 3' -50.2 NC_005263.2 + 28818 0.69 0.844982
Target:  5'- aCgGUGAcCGUGAcGCGCAcgcGGCGCu- -3'
miRNA:   3'- -GgCACUuGCACUuUGCGUu--CCGUGcc -5'
24230 3' -50.2 NC_005263.2 + 38650 0.69 0.844982
Target:  5'- gCCGUGAGCGcgucgGAcggcAACGCGucGCACaGGu -3'
miRNA:   3'- -GGCACUUGCa----CU----UUGCGUucCGUG-CC- -5'
24230 3' -50.2 NC_005263.2 + 4939 0.69 0.826771
Target:  5'- -gGUGAGCGgcgGcAGCgGCAucGGCACGGc -3'
miRNA:   3'- ggCACUUGCa--CuUUG-CGUu-CCGUGCC- -5'
24230 3' -50.2 NC_005263.2 + 23951 0.69 0.817337
Target:  5'- gUCGUGAGCGUGAcggugccaccCGUcAGGC-CGGu -3'
miRNA:   3'- -GGCACUUGCACUuu--------GCGuUCCGuGCC- -5'
24230 3' -50.2 NC_005263.2 + 19746 0.69 0.807697
Target:  5'- gCGUGAACGU----CGCGGGcaGCGCGGc -3'
miRNA:   3'- gGCACUUGCAcuuuGCGUUC--CGUGCC- -5'
24230 3' -50.2 NC_005263.2 + 31010 0.7 0.777661
Target:  5'- aUCGUGcAGCaGUGcg--GCGAGGCGCGGc -3'
miRNA:   3'- -GGCAC-UUG-CACuuugCGUUCCGUGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.