miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24230 5' -59.6 NC_005263.2 + 17743 0.72 0.194836
Target:  5'- -gCGGUcGAGCGCGAgcagCGUGagCGCgGCg -3'
miRNA:   3'- gaGCCA-CUCGCGCUa---GCACg-GCGgCG- -5'
24230 5' -59.6 NC_005263.2 + 41160 0.68 0.336352
Target:  5'- aUUGGcG-GCGCGAaacgugucgacgaUCGUGCgCGCCGUc -3'
miRNA:   3'- gAGCCaCuCGCGCU-------------AGCACG-GCGGCG- -5'
24230 5' -59.6 NC_005263.2 + 28047 0.69 0.321546
Target:  5'- -aCGGcaAGCGCGA-CGguacgGCCGUCGCg -3'
miRNA:   3'- gaGCCacUCGCGCUaGCa----CGGCGGCG- -5'
24230 5' -59.6 NC_005263.2 + 9820 0.69 0.321546
Target:  5'- gUCGGUGcGCaccGCGAUCGacacUGCUGUgGCg -3'
miRNA:   3'- gAGCCACuCG---CGCUAGC----ACGGCGgCG- -5'
24230 5' -59.6 NC_005263.2 + 2000 0.7 0.284936
Target:  5'- -cCGGUGccGGCGCGcUCGUGCagacgCGCgGCu -3'
miRNA:   3'- gaGCCAC--UCGCGCuAGCACG-----GCGgCG- -5'
24230 5' -59.6 NC_005263.2 + 20402 0.7 0.284239
Target:  5'- aUCGGUGccgacAGCgGUGAUCGUcgggacgGCgGCCGCc -3'
miRNA:   3'- gAGCCAC-----UCG-CGCUAGCA-------CGgCGGCG- -5'
24230 5' -59.6 NC_005263.2 + 39392 0.7 0.249808
Target:  5'- --gGGUGAGCagccaaccuGCGAUCGcgcgcgcaugcgccUGCCGgCCGCu -3'
miRNA:   3'- gagCCACUCG---------CGCUAGC--------------ACGGC-GGCG- -5'
24230 5' -59.6 NC_005263.2 + 37300 0.71 0.233329
Target:  5'- aCUCGGcaccGGCGCGcGUCGUGagcggcguaUCGCCGCg -3'
miRNA:   3'- -GAGCCac--UCGCGC-UAGCAC---------GGCGGCG- -5'
24230 5' -59.6 NC_005263.2 + 33773 0.71 0.216101
Target:  5'- --aGGUGucuGGCGCGuau-UGCCGCCGCg -3'
miRNA:   3'- gagCCAC---UCGCGCuagcACGGCGGCG- -5'
24230 5' -59.6 NC_005263.2 + 25786 0.68 0.337145
Target:  5'- aUCGGgcaGGcCGCGAaCGUacgcGCCGCCGUg -3'
miRNA:   3'- gAGCCac-UC-GCGCUaGCA----CGGCGGCG- -5'
24230 5' -59.6 NC_005263.2 + 14519 0.68 0.345149
Target:  5'- gCUCGGcucgaaagaGGCGCGcgCGcacGCCGUCGCa -3'
miRNA:   3'- -GAGCCac-------UCGCGCuaGCa--CGGCGGCG- -5'
24230 5' -59.6 NC_005263.2 + 26092 0.66 0.441865
Target:  5'- -gUGGUGAccggcacaccagGCGUGA-CG-GCUGCCGCc -3'
miRNA:   3'- gaGCCACU------------CGCGCUaGCaCGGCGGCG- -5'
24230 5' -59.6 NC_005263.2 + 2696 0.66 0.480652
Target:  5'- -gCGaUGAaccGCGCGGUCG-GCCuGUCGCg -3'
miRNA:   3'- gaGCcACU---CGCGCUAGCaCGG-CGGCG- -5'
24230 5' -59.6 NC_005263.2 + 12629 0.66 0.480652
Target:  5'- -gCGGgcGGGCGCuacggCGccgccgGCCGCCGCg -3'
miRNA:   3'- gaGCCa-CUCGCGcua--GCa-----CGGCGGCG- -5'
24230 5' -59.6 NC_005263.2 + 27860 0.66 0.480652
Target:  5'- -aCGGcGAuguaccGCGCGAagcauggCcUGCCGCCGCa -3'
miRNA:   3'- gaGCCaCU------CGCGCUa------GcACGGCGGCG- -5'
24230 5' -59.6 NC_005263.2 + 47325 0.66 0.480652
Target:  5'- -----cGAGCGCGGacagcguacccgUCGUGCCgGCCGg -3'
miRNA:   3'- gagccaCUCGCGCU------------AGCACGG-CGGCg -5'
24230 5' -59.6 NC_005263.2 + 36397 0.66 0.470796
Target:  5'- -gCGGUGcauaucgcauGGCGCaGGacgucgCGUGUCGCUGCa -3'
miRNA:   3'- gaGCCAC----------UCGCG-CUa-----GCACGGCGGCG- -5'
24230 5' -59.6 NC_005263.2 + 333 0.66 0.461043
Target:  5'- gCUCGGUG-GCGUGAcgaccacaUCGaacgGUaCGCCGUg -3'
miRNA:   3'- -GAGCCACuCGCGCU--------AGCa---CG-GCGGCG- -5'
24230 5' -59.6 NC_005263.2 + 44976 0.66 0.451399
Target:  5'- gUCGGcGAGCGCGGccaggaUCGgGCCGaCCu- -3'
miRNA:   3'- gAGCCaCUCGCGCU------AGCaCGGC-GGcg -5'
24230 5' -59.6 NC_005263.2 + 38653 0.66 0.451399
Target:  5'- gUCGccGUGAGCGCG-UCGgacgGCaacgCGUCGCa -3'
miRNA:   3'- gAGC--CACUCGCGCuAGCa---CG----GCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.