miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24238 3' -55.6 NC_005263.2 + 18615 0.66 0.709005
Target:  5'- uGCGCGggU-UCGUGCagCGGCcCGaCCa -3'
miRNA:   3'- -UGUGCuuGuAGCACGg-GCCGaGCaGG- -5'
24238 3' -55.6 NC_005263.2 + 35180 0.66 0.698239
Target:  5'- --uUGAGCA-CGUaCCCGGCuacgccguuugUCGUCCa -3'
miRNA:   3'- uguGCUUGUaGCAcGGGCCG-----------AGCAGG- -5'
24238 3' -55.6 NC_005263.2 + 46562 0.66 0.698239
Target:  5'- aACACGAA---CGUGCUCGGCaUCGa-- -3'
miRNA:   3'- -UGUGCUUguaGCACGGGCCG-AGCagg -5'
24238 3' -55.6 NC_005263.2 + 22402 0.66 0.698239
Target:  5'- cCGCGAACGUaCGcGCcgCCGuGCUCG-CCg -3'
miRNA:   3'- uGUGCUUGUA-GCaCG--GGC-CGAGCaGG- -5'
24238 3' -55.6 NC_005263.2 + 38622 0.66 0.691747
Target:  5'- -uGCGGGCAUCGUgaagcgucagcugcaGCCgGGCgCG-CCg -3'
miRNA:   3'- ugUGCUUGUAGCA---------------CGGgCCGaGCaGG- -5'
24238 3' -55.6 NC_005263.2 + 14370 0.66 0.687408
Target:  5'- -gACGGGCc-CGaUGCCgGGCcgcUCGUCCg -3'
miRNA:   3'- ugUGCUUGuaGC-ACGGgCCG---AGCAGG- -5'
24238 3' -55.6 NC_005263.2 + 1932 0.66 0.687408
Target:  5'- uGCACGAGCG-CGccgGCaCCGGCgaCG-CCg -3'
miRNA:   3'- -UGUGCUUGUaGCa--CG-GGCCGa-GCaGG- -5'
24238 3' -55.6 NC_005263.2 + 33727 0.66 0.676524
Target:  5'- cGCAccCGGACGagCG-GCCCGGCaUCGggcCCg -3'
miRNA:   3'- -UGU--GCUUGUa-GCaCGGGCCG-AGCa--GG- -5'
24238 3' -55.6 NC_005263.2 + 47439 0.66 0.676524
Target:  5'- aGCACGGGCAcuacCGUGCCUuGCguuucaCGUUCa -3'
miRNA:   3'- -UGUGCUUGUa---GCACGGGcCGa-----GCAGG- -5'
24238 3' -55.6 NC_005263.2 + 22369 0.66 0.676524
Target:  5'- -gGCGGACAggUCGUGCaCGGCgcgcagCG-CCa -3'
miRNA:   3'- ugUGCUUGU--AGCACGgGCCGa-----GCaGG- -5'
24238 3' -55.6 NC_005263.2 + 36168 0.66 0.676524
Target:  5'- -gGCGAACGUCGauaCCGGC-CGgcugCCg -3'
miRNA:   3'- ugUGCUUGUAGCacgGGCCGaGCa---GG- -5'
24238 3' -55.6 NC_005263.2 + 10405 0.66 0.665599
Target:  5'- -gGCGAGCGg---GUCCGGCgcgCGUUCa -3'
miRNA:   3'- ugUGCUUGUagcaCGGGCCGa--GCAGG- -5'
24238 3' -55.6 NC_005263.2 + 22228 0.66 0.654643
Target:  5'- uCGCcGGCGUCG-GCCCGGUUgCGacgCCg -3'
miRNA:   3'- uGUGcUUGUAGCaCGGGCCGA-GCa--GG- -5'
24238 3' -55.6 NC_005263.2 + 38015 0.66 0.654643
Target:  5'- uCGCGAACAUucucgacgCGcUGCCCGcgucGCUCGgcuUCCa -3'
miRNA:   3'- uGUGCUUGUA--------GC-ACGGGC----CGAGC---AGG- -5'
24238 3' -55.6 NC_005263.2 + 38429 0.66 0.654643
Target:  5'- aGCGCGAcguGCGUuaCGUGCUCGGCggCGa-- -3'
miRNA:   3'- -UGUGCU---UGUA--GCACGGGCCGa-GCagg -5'
24238 3' -55.6 NC_005263.2 + 9460 0.67 0.643666
Target:  5'- cCACGGGCAgcggCGcGCCCGGCUg---- -3'
miRNA:   3'- uGUGCUUGUa---GCaCGGGCCGAgcagg -5'
24238 3' -55.6 NC_005263.2 + 10188 0.67 0.632678
Target:  5'- uCGCGAGCAggccgaagcgcUCGccgGCCUcgGGCUCGagUCCa -3'
miRNA:   3'- uGUGCUUGU-----------AGCa--CGGG--CCGAGC--AGG- -5'
24238 3' -55.6 NC_005263.2 + 22765 0.67 0.632678
Target:  5'- aACGCGAugG-CGaccUGCCCgaGGCUCGUg- -3'
miRNA:   3'- -UGUGCUugUaGC---ACGGG--CCGAGCAgg -5'
24238 3' -55.6 NC_005263.2 + 673 0.67 0.632678
Target:  5'- gGCACGGua---GUGCCCGuGCUCGg-- -3'
miRNA:   3'- -UGUGCUuguagCACGGGC-CGAGCagg -5'
24238 3' -55.6 NC_005263.2 + 29136 0.67 0.62169
Target:  5'- -aGCGAaaccagACGUCGUGCCgGcugcGCUCGUaaCCg -3'
miRNA:   3'- ugUGCU------UGUAGCACGGgC----CGAGCA--GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.