Results 21 - 40 of 56 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24238 | 3' | -55.6 | NC_005263.2 | + | 18857 | 0.69 | 0.503316 |
Target: 5'- cGCGUGAACAacgCGUGCCuCGGCgCG-CCg -3' miRNA: 3'- -UGUGCUUGUa--GCACGG-GCCGaGCaGG- -5' |
|||||||
24238 | 3' | -55.6 | NC_005263.2 | + | 17317 | 0.69 | 0.513745 |
Target: 5'- cGCGCGAAU-UCG-GCCCGGCg---CCg -3' miRNA: 3'- -UGUGCUUGuAGCaCGGGCCGagcaGG- -5' |
|||||||
24238 | 3' | -55.6 | NC_005263.2 | + | 4704 | 0.69 | 0.513745 |
Target: 5'- -gGCGAGCuUCuUG-CCGGaCUCGUCCg -3' miRNA: 3'- ugUGCUUGuAGcACgGGCC-GAGCAGG- -5' |
|||||||
24238 | 3' | -55.6 | NC_005263.2 | + | 46495 | 0.69 | 0.517941 |
Target: 5'- cGCACucGGCGUCGaaguguccgccgcgcUGCUCGGCaCGUCCa -3' miRNA: 3'- -UGUGc-UUGUAGC---------------ACGGGCCGaGCAGG- -5' |
|||||||
24238 | 3' | -55.6 | NC_005263.2 | + | 11523 | 0.68 | 0.534858 |
Target: 5'- cGCGCGAugAaggCG-GCgCGGUUCGUCg -3' miRNA: 3'- -UGUGCUugUa--GCaCGgGCCGAGCAGg -5' |
|||||||
24238 | 3' | -55.6 | NC_005263.2 | + | 35433 | 0.68 | 0.534858 |
Target: 5'- gACGCGAACGaCGacCCCGGCgCG-CCg -3' miRNA: 3'- -UGUGCUUGUaGCacGGGCCGaGCaGG- -5' |
|||||||
24238 | 3' | -55.6 | NC_005263.2 | + | 45450 | 0.68 | 0.54553 |
Target: 5'- cGCACGccuGCAccUCGaGCCCGGCgcgaaCGUgCCg -3' miRNA: 3'- -UGUGCu--UGU--AGCaCGGGCCGa----GCA-GG- -5' |
|||||||
24238 | 3' | -55.6 | NC_005263.2 | + | 23622 | 0.68 | 0.556269 |
Target: 5'- gGCACcGugGUCGaGCCgGaGCUCGUCg -3' miRNA: 3'- -UGUGcUugUAGCaCGGgC-CGAGCAGg -5' |
|||||||
24238 | 3' | -55.6 | NC_005263.2 | + | 26986 | 0.68 | 0.556269 |
Target: 5'- cGCGcCGAGCAgcaccCGcugcGCCgGGCUCGUCg -3' miRNA: 3'- -UGU-GCUUGUa----GCa---CGGgCCGAGCAGg -5' |
|||||||
24238 | 3' | -55.6 | NC_005263.2 | + | 13572 | 0.68 | 0.576833 |
Target: 5'- gGCACGAGCggCGUGUCCaugaucuGG-UCGUCg -3' miRNA: 3'- -UGUGCUUGuaGCACGGG-------CCgAGCAGg -5' |
|||||||
24238 | 3' | -55.6 | NC_005263.2 | + | 30532 | 0.68 | 0.577921 |
Target: 5'- uGCGCGAGCAgcUCGaUGCgCuGCUCGacgUCCu -3' miRNA: 3'- -UGUGCUUGU--AGC-ACGgGcCGAGC---AGG- -5' |
|||||||
24238 | 3' | -55.6 | NC_005263.2 | + | 18538 | 0.68 | 0.577921 |
Target: 5'- cCGCGAGCGcguucaagaaguUCGcgcaGCCCGGCaccgguggCGUCCc -3' miRNA: 3'- uGUGCUUGU------------AGCa---CGGGCCGa-------GCAGG- -5' |
|||||||
24238 | 3' | -55.6 | NC_005263.2 | + | 24376 | 0.68 | 0.577921 |
Target: 5'- gGCGCGAACAUCGUGCa-GGUagGg-- -3' miRNA: 3'- -UGUGCUUGUAGCACGggCCGagCagg -5' |
|||||||
24238 | 3' | -55.6 | NC_005263.2 | + | 6543 | 0.67 | 0.588817 |
Target: 5'- cGCGCGAaagcucGCAUCGccGCCaCGGCgCG-CCg -3' miRNA: 3'- -UGUGCU------UGUAGCa-CGG-GCCGaGCaGG- -5' |
|||||||
24238 | 3' | -55.6 | NC_005263.2 | + | 3515 | 0.67 | 0.588817 |
Target: 5'- cGCGCGGcaaucuucuucaGCGucUCGcGgCCGGCgUCGUCCa -3' miRNA: 3'- -UGUGCU------------UGU--AGCaCgGGCCG-AGCAGG- -5' |
|||||||
24238 | 3' | -55.6 | NC_005263.2 | + | 2564 | 0.67 | 0.610711 |
Target: 5'- aACGCGAGacgAUCG-GCaaucaCGGC-CGUCCa -3' miRNA: 3'- -UGUGCUUg--UAGCaCGg----GCCGaGCAGG- -5' |
|||||||
24238 | 3' | -55.6 | NC_005263.2 | + | 29136 | 0.67 | 0.62169 |
Target: 5'- -aGCGAaaccagACGUCGUGCCgGcugcGCUCGUaaCCg -3' miRNA: 3'- ugUGCU------UGUAGCACGGgC----CGAGCA--GG- -5' |
|||||||
24238 | 3' | -55.6 | NC_005263.2 | + | 22765 | 0.67 | 0.632678 |
Target: 5'- aACGCGAugG-CGaccUGCCCgaGGCUCGUg- -3' miRNA: 3'- -UGUGCUugUaGC---ACGGG--CCGAGCAgg -5' |
|||||||
24238 | 3' | -55.6 | NC_005263.2 | + | 10188 | 0.67 | 0.632678 |
Target: 5'- uCGCGAGCAggccgaagcgcUCGccgGCCUcgGGCUCGagUCCa -3' miRNA: 3'- uGUGCUUGU-----------AGCa--CGGG--CCGAGC--AGG- -5' |
|||||||
24238 | 3' | -55.6 | NC_005263.2 | + | 673 | 0.67 | 0.632678 |
Target: 5'- gGCACGGua---GUGCCCGuGCUCGg-- -3' miRNA: 3'- -UGUGCUuguagCACGGGC-CGAGCagg -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home