miRNA display CGI


Results 1 - 20 of 110 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24260 3' -59.4 NC_005263.2 + 10297 1.11 0.000237
Target:  5'- aGCGCCGGAUGCGCGCCCGUCGUCAACg -3'
miRNA:   3'- -CGCGGCCUACGCGCGGGCAGCAGUUG- -5'
24260 3' -59.4 NC_005263.2 + 22907 0.8 0.053584
Target:  5'- cGUGCCGGAcggaggugcccaagcUGCGCGCCCGUCccaaaCGACg -3'
miRNA:   3'- -CGCGGCCU---------------ACGCGCGGGCAGca---GUUG- -5'
24260 3' -59.4 NC_005263.2 + 20963 0.77 0.091516
Target:  5'- cGCuGUCGGAcaucgccgacgcggcUGCGCGCCUGcgCGUCGACg -3'
miRNA:   3'- -CG-CGGCCU---------------ACGCGCGGGCa-GCAGUUG- -5'
24260 3' -59.4 NC_005263.2 + 33739 0.77 0.093058
Target:  5'- aGCGgcCCGGcAU-CGgGCCCGUCGUCAACg -3'
miRNA:   3'- -CGC--GGCC-UAcGCgCGGGCAGCAGUUG- -5'
24260 3' -59.4 NC_005263.2 + 41162 0.76 0.109885
Target:  5'- cGCGCgGcGUGgGCGgCCGUCGUCGAUa -3'
miRNA:   3'- -CGCGgCcUACgCGCgGGCAGCAGUUG- -5'
24260 3' -59.4 NC_005263.2 + 26876 0.76 0.109885
Target:  5'- cGCGCCGucGAUGCGaaaGCCgGUCGaCGACa -3'
miRNA:   3'- -CGCGGC--CUACGCg--CGGgCAGCaGUUG- -5'
24260 3' -59.4 NC_005263.2 + 19316 0.75 0.129179
Target:  5'- cGCGcCCGGAUGCGCaaggcaaccaggaGCCCGacauuuacaccuUCGUCGAg -3'
miRNA:   3'- -CGC-GGCCUACGCG-------------CGGGC------------AGCAGUUg -5'
24260 3' -59.4 NC_005263.2 + 11897 0.74 0.14053
Target:  5'- gGCGCCGGGcgccUGCGCGCUgG-CGUCcuguGCg -3'
miRNA:   3'- -CGCGGCCU----ACGCGCGGgCaGCAGu---UG- -5'
24260 3' -59.4 NC_005263.2 + 44777 0.74 0.144383
Target:  5'- gGCGCCGGcgGCGCGCagaCGUUG--AACa -3'
miRNA:   3'- -CGCGGCCuaCGCGCGg--GCAGCagUUG- -5'
24260 3' -59.4 NC_005263.2 + 15764 0.74 0.15197
Target:  5'- gGCGgcuUCGGcguguucaacaaaGUGCGuCGCCCGUCGUCGAUc -3'
miRNA:   3'- -CGC---GGCC-------------UACGC-GCGGGCAGCAGUUG- -5'
24260 3' -59.4 NC_005263.2 + 10180 0.74 0.156526
Target:  5'- gGCuGCCGGcgGCGCGCCUG-CGccCGGCu -3'
miRNA:   3'- -CG-CGGCCuaCGCGCGGGCaGCa-GUUG- -5'
24260 3' -59.4 NC_005263.2 + 23400 0.74 0.156526
Target:  5'- cGCGC--GAUGCGauuGCCCGUCGaUCAACg -3'
miRNA:   3'- -CGCGgcCUACGCg--CGGGCAGC-AGUUG- -5'
24260 3' -59.4 NC_005263.2 + 24787 0.73 0.160775
Target:  5'- gGCGUCGGcgGCuCGCCgGgCGUCGGCg -3'
miRNA:   3'- -CGCGGCCuaCGcGCGGgCaGCAGUUG- -5'
24260 3' -59.4 NC_005263.2 + 30303 0.73 0.174151
Target:  5'- aGCGCCGG--GCGCGgCCGgCGUCuuGACg -3'
miRNA:   3'- -CGCGGCCuaCGCGCgGGCaGCAG--UUG- -5'
24260 3' -59.4 NC_005263.2 + 16488 0.73 0.178825
Target:  5'- gGCGCUGcGccGCGCGgCCGUCG-CGACc -3'
miRNA:   3'- -CGCGGC-CuaCGCGCgGGCAGCaGUUG- -5'
24260 3' -59.4 NC_005263.2 + 20190 0.73 0.178825
Target:  5'- cGCGCCGGgcGaCGCGCC-GcCGUCGAg -3'
miRNA:   3'- -CGCGGCCuaC-GCGCGGgCaGCAGUUg -5'
24260 3' -59.4 NC_005263.2 + 17751 0.72 0.198652
Target:  5'- gGCGCCGGcgGCaGCGCggCCG-CGcUCGGCa -3'
miRNA:   3'- -CGCGGCCuaCG-CGCG--GGCaGC-AGUUG- -5'
24260 3' -59.4 NC_005263.2 + 26924 0.72 0.2039
Target:  5'- cGCGCCGc--GCGCGUCCG-CGUCcGCc -3'
miRNA:   3'- -CGCGGCcuaCGCGCGGGCaGCAGuUG- -5'
24260 3' -59.4 NC_005263.2 + 28419 0.72 0.2039
Target:  5'- gGCGCCGGcacGCGCGUgaaCGUCGcgggCAGCg -3'
miRNA:   3'- -CGCGGCCua-CGCGCGg--GCAGCa---GUUG- -5'
24260 3' -59.4 NC_005263.2 + 2692 0.72 0.214756
Target:  5'- cGCGCCGGcgGCGgcCGacagaCCGaguUCGUCGGCg -3'
miRNA:   3'- -CGCGGCCuaCGC--GCg----GGC---AGCAGUUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.