miRNA display CGI


Results 1 - 20 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24260 3' -59.4 NC_005263.2 + 10297 1.11 0.000237
Target:  5'- aGCGCCGGAUGCGCGCCCGUCGUCAACg -3'
miRNA:   3'- -CGCGGCCUACGCGCGGGCAGCAGUUG- -5'
24260 3' -59.4 NC_005263.2 + 2905 0.7 0.283562
Target:  5'- -gGCCGaGAcgugcUGCGCGgCCGUCGuaaccgUCAACg -3'
miRNA:   3'- cgCGGC-CU-----ACGCGCgGGCAGC------AGUUG- -5'
24260 3' -59.4 NC_005263.2 + 12664 0.7 0.290614
Target:  5'- uCGUCGGccgGCGCGCCgggGUCGUCGuucGCg -3'
miRNA:   3'- cGCGGCCua-CGCGCGGg--CAGCAGU---UG- -5'
24260 3' -59.4 NC_005263.2 + 17638 0.65 0.498698
Target:  5'- gGCGCCGGAUGUGgCGCaacgcgaaggccgCCG-CGcUCAc- -3'
miRNA:   3'- -CGCGGCCUACGC-GCG-------------GGCaGC-AGUug -5'
24260 3' -59.4 NC_005263.2 + 11897 0.74 0.14053
Target:  5'- gGCGCCGGGcgccUGCGCGCUgG-CGUCcuguGCg -3'
miRNA:   3'- -CGCGGCCU----ACGCGCGGgCaGCAGu---UG- -5'
24260 3' -59.4 NC_005263.2 + 44777 0.74 0.144383
Target:  5'- gGCGCCGGcgGCGCGCagaCGUUG--AACa -3'
miRNA:   3'- -CGCGGCCuaCGCGCGg--GCAGCagUUG- -5'
24260 3' -59.4 NC_005263.2 + 20190 0.73 0.178825
Target:  5'- cGCGCCGGgcGaCGCGCC-GcCGUCGAg -3'
miRNA:   3'- -CGCGGCCuaC-GCGCGGgCaGCAGUUg -5'
24260 3' -59.4 NC_005263.2 + 2692 0.72 0.214756
Target:  5'- cGCGCCGGcgGCGgcCGacagaCCGaguUCGUCGGCg -3'
miRNA:   3'- -CGCGGCCuaCGC--GCg----GGC---AGCAGUUG- -5'
24260 3' -59.4 NC_005263.2 + 4247 0.7 0.25606
Target:  5'- gGCGUCaGGAUGCcgcgcacguuguuGCGCCCG--GUCGACa -3'
miRNA:   3'- -CGCGG-CCUACG-------------CGCGGGCagCAGUUG- -5'
24260 3' -59.4 NC_005263.2 + 46875 0.7 0.283562
Target:  5'- -gGCCGGAUGacauCGCGCUCGUCccCGAUg -3'
miRNA:   3'- cgCGGCCUAC----GCGCGGGCAGcaGUUG- -5'
24260 3' -59.4 NC_005263.2 + 43135 0.7 0.256704
Target:  5'- cGUGCCuGGA-GCGCGCCggaacucaGUCGUCGc- -3'
miRNA:   3'- -CGCGG-CCUaCGCGCGGg-------CAGCAGUug -5'
24260 3' -59.4 NC_005263.2 + 3740 0.71 0.231966
Target:  5'- cGgGCCGGAUcaGCGCGUacgugCCGUacaaUGUCGACg -3'
miRNA:   3'- -CgCGGCCUA--CGCGCG-----GGCA----GCAGUUG- -5'
24260 3' -59.4 NC_005263.2 + 22907 0.8 0.053584
Target:  5'- cGUGCCGGAcggaggugcccaagcUGCGCGCCCGUCccaaaCGACg -3'
miRNA:   3'- -CGCGGCCU---------------ACGCGCGGGCAGca---GUUG- -5'
24260 3' -59.4 NC_005263.2 + 47290 0.7 0.256704
Target:  5'- cGCGCCGaa-GCGCaGUCCGcUGUCGACg -3'
miRNA:   3'- -CGCGGCcuaCGCG-CGGGCaGCAGUUG- -5'
24260 3' -59.4 NC_005263.2 + 20963 0.77 0.091516
Target:  5'- cGCuGUCGGAcaucgccgacgcggcUGCGCGCCUGcgCGUCGACg -3'
miRNA:   3'- -CG-CGGCCU---------------ACGCGCGGGCa-GCAGUUG- -5'
24260 3' -59.4 NC_005263.2 + 37574 0.71 0.226104
Target:  5'- cGUuCCGG-UGCGCuGCUCGUgCGUCAGCu -3'
miRNA:   3'- -CGcGGCCuACGCG-CGGGCA-GCAGUUG- -5'
24260 3' -59.4 NC_005263.2 + 12944 0.7 0.263217
Target:  5'- uGCGCUGGuacGCGCGCacguaGUCGUacCAACg -3'
miRNA:   3'- -CGCGGCCua-CGCGCGgg---CAGCA--GUUG- -5'
24260 3' -59.4 NC_005263.2 + 6611 0.7 0.283562
Target:  5'- cGCGuUCGGcgGCGCGCUCGgcgCgGUCGAg -3'
miRNA:   3'- -CGC-GGCCuaCGCGCGGGCa--G-CAGUUg -5'
24260 3' -59.4 NC_005263.2 + 26876 0.76 0.109885
Target:  5'- cGCGCCGucGAUGCGaaaGCCgGUCGaCGACa -3'
miRNA:   3'- -CGCGGC--CUACGCg--CGGgCAGCaGUUG- -5'
24260 3' -59.4 NC_005263.2 + 10180 0.74 0.156526
Target:  5'- gGCuGCCGGcgGCGCGCCUG-CGccCGGCu -3'
miRNA:   3'- -CG-CGGCCuaCGCGCGGGCaGCa-GUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.