miRNA display CGI


Results 1 - 20 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24260 3' -59.4 NC_005263.2 + 1148 0.68 0.351976
Target:  5'- cCGCUcGAaaguaGUGCGCCCGUCG-CGGCg -3'
miRNA:   3'- cGCGGcCUa----CGCGCGGGCAGCaGUUG- -5'
24260 3' -59.4 NC_005263.2 + 1940 0.69 0.312594
Target:  5'- cGCGCCGGcaccgGCGaCGCCgGcaaccgCGUCGAUc -3'
miRNA:   3'- -CGCGGCCua---CGC-GCGGgCa-----GCAGUUG- -5'
24260 3' -59.4 NC_005263.2 + 2271 0.66 0.489627
Target:  5'- aGCGCa----GCGCGUUCGcCGUCGGCa -3'
miRNA:   3'- -CGCGgccuaCGCGCGGGCaGCAGUUG- -5'
24260 3' -59.4 NC_005263.2 + 2300 0.66 0.489627
Target:  5'- uGCGCCGuGGccgGCaCGCCCG-CGUUGAa -3'
miRNA:   3'- -CGCGGC-CUa--CGcGCGGGCaGCAGUUg -5'
24260 3' -59.4 NC_005263.2 + 2654 0.66 0.478647
Target:  5'- cGCGCCGGGcucgaggUGCagGCGUgCGUUGUggUAGCu -3'
miRNA:   3'- -CGCGGCCU-------ACG--CGCGgGCAGCA--GUUG- -5'
24260 3' -59.4 NC_005263.2 + 2692 0.72 0.214756
Target:  5'- cGCGCCGGcgGCGgcCGacagaCCGaguUCGUCGGCg -3'
miRNA:   3'- -CGCGGCCuaCGC--GCg----GGC---AGCAGUUG- -5'
24260 3' -59.4 NC_005263.2 + 2905 0.7 0.283562
Target:  5'- -gGCCGaGAcgugcUGCGCGgCCGUCGuaaccgUCAACg -3'
miRNA:   3'- cgCGGC-CU-----ACGCGCgGGCAGC------AGUUG- -5'
24260 3' -59.4 NC_005263.2 + 3116 0.68 0.360262
Target:  5'- gGCGCC--AUGCGCGCCuCGaUCccggacagGUCAGCa -3'
miRNA:   3'- -CGCGGccUACGCGCGG-GC-AG--------CAGUUG- -5'
24260 3' -59.4 NC_005263.2 + 3740 0.71 0.231966
Target:  5'- cGgGCCGGAUcaGCGCGUacgugCCGUacaaUGUCGACg -3'
miRNA:   3'- -CgCGGCCUA--CGCGCG-----GGCA----GCAGUUG- -5'
24260 3' -59.4 NC_005263.2 + 4247 0.7 0.25606
Target:  5'- gGCGUCaGGAUGCcgcgcacguuguuGCGCCCG--GUCGACa -3'
miRNA:   3'- -CGCGG-CCUACG-------------CGCGGGCagCAGUUG- -5'
24260 3' -59.4 NC_005263.2 + 4901 0.69 0.297803
Target:  5'- cGCGCUGcGAUaGCGCGCC-GUCGcCAu- -3'
miRNA:   3'- -CGCGGC-CUA-CGCGCGGgCAGCaGUug -5'
24260 3' -59.4 NC_005263.2 + 6365 0.67 0.440741
Target:  5'- cGCGCCGugccgcccGAaguUGC-CGCCCG-CGUCGAg -3'
miRNA:   3'- -CGCGGC--------CU---ACGcGCGGGCaGCAGUUg -5'
24260 3' -59.4 NC_005263.2 + 6611 0.7 0.283562
Target:  5'- cGCGuUCGGcgGCGCGCUCGgcgCgGUCGAg -3'
miRNA:   3'- -CGC-GGCCuaCGCGCGGGCa--G-CAGUUg -5'
24260 3' -59.4 NC_005263.2 + 6766 0.68 0.385929
Target:  5'- cGCGCCGG--GCGaGCUCGgccUCGUCGAa -3'
miRNA:   3'- -CGCGGCCuaCGCgCGGGC---AGCAGUUg -5'
24260 3' -59.4 NC_005263.2 + 8255 0.66 0.489627
Target:  5'- gGCaGCCGGGuaUGCGCGUUCGgaCGgccaCAGCg -3'
miRNA:   3'- -CG-CGGCCU--ACGCGCGGGCa-GCa---GUUG- -5'
24260 3' -59.4 NC_005263.2 + 9863 0.67 0.398313
Target:  5'- -gGCCGGAuucagcucguuguccUcgGCGCuuucauGCUCGUCGUCGGCg -3'
miRNA:   3'- cgCGGCCU---------------A--CGCG------CGGGCAGCAGUUG- -5'
24260 3' -59.4 NC_005263.2 + 10180 0.74 0.156526
Target:  5'- gGCuGCCGGcgGCGCGCCUG-CGccCGGCu -3'
miRNA:   3'- -CG-CGGCCuaCGCGCGGGCaGCa-GUUG- -5'
24260 3' -59.4 NC_005263.2 + 10297 1.11 0.000237
Target:  5'- aGCGCCGGAUGCGCGCCCGUCGUCAACg -3'
miRNA:   3'- -CGCGGCCUACGCGCGGGCAGCAGUUG- -5'
24260 3' -59.4 NC_005263.2 + 10390 0.67 0.394748
Target:  5'- cGCGCCGGGccggccggcgaGCGgGUCCGgcgcgCGUuCAACg -3'
miRNA:   3'- -CGCGGCCUa----------CGCgCGGGCa----GCA-GUUG- -5'
24260 3' -59.4 NC_005263.2 + 10616 0.71 0.226104
Target:  5'- aGCGCCGGaAUGUcgGCGCCguUCGUCAc- -3'
miRNA:   3'- -CGCGGCC-UACG--CGCGGgcAGCAGUug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.