miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24263 3' -54.4 NC_005263.2 + 11945 1.14 0.000597
Target:  5'- gCCGGUAUCGACGUUCGCCUCGAGCGCg -3'
miRNA:   3'- -GGCCAUAGCUGCAAGCGGAGCUCGCG- -5'
24263 3' -54.4 NC_005263.2 + 33403 0.91 0.025696
Target:  5'- uCCGG-AUCGGCGUcgaUCGCCUUGAGCGCc -3'
miRNA:   3'- -GGCCaUAGCUGCA---AGCGGAGCUCGCG- -5'
24263 3' -54.4 NC_005263.2 + 12678 0.79 0.155805
Target:  5'- gCCGGgGUCGuCGUUCGCgUCGAGCu- -3'
miRNA:   3'- -GGCCaUAGCuGCAAGCGgAGCUCGcg -5'
24263 3' -54.4 NC_005263.2 + 38509 0.79 0.178409
Target:  5'- aUCGGcGUCGACGUgucgcaggUCGCCaagggcagCGAGCGCg -3'
miRNA:   3'- -GGCCaUAGCUGCA--------AGCGGa-------GCUCGCG- -5'
24263 3' -54.4 NC_005263.2 + 17003 0.77 0.220631
Target:  5'- gCCgGGUGUCGaaGCGUUCGUaucgCUCGAGCaGCg -3'
miRNA:   3'- -GG-CCAUAGC--UGCAAGCG----GAGCUCG-CG- -5'
24263 3' -54.4 NC_005263.2 + 32786 0.77 0.23244
Target:  5'- cUCGGUGUCGGCccgCGCCUCGcGCaGCu -3'
miRNA:   3'- -GGCCAUAGCUGcaaGCGGAGCuCG-CG- -5'
24263 3' -54.4 NC_005263.2 + 20193 0.76 0.257655
Target:  5'- gCCGGg--CGACGcgcCGCCgUCGAGUGCu -3'
miRNA:   3'- -GGCCauaGCUGCaa-GCGG-AGCUCGCG- -5'
24263 3' -54.4 NC_005263.2 + 3083 0.76 0.27108
Target:  5'- -aGGcGUCGGCGaucUUCGCCUCGuucgacAGCGCg -3'
miRNA:   3'- ggCCaUAGCUGC---AAGCGGAGC------UCGCG- -5'
24263 3' -54.4 NC_005263.2 + 43828 0.75 0.285062
Target:  5'- gCCGGgcaCGAUGUUCGUgUCGAccggGCGCa -3'
miRNA:   3'- -GGCCauaGCUGCAAGCGgAGCU----CGCG- -5'
24263 3' -54.4 NC_005263.2 + 29590 0.75 0.307093
Target:  5'- gCGGUGUCGACGc-CGCCgaucgCGAGgCGUu -3'
miRNA:   3'- gGCCAUAGCUGCaaGCGGa----GCUC-GCG- -5'
24263 3' -54.4 NC_005263.2 + 14037 0.74 0.322491
Target:  5'- aCGGU-UCGgccACGggCGCCgcgUCGAGCGCa -3'
miRNA:   3'- gGCCAuAGC---UGCaaGCGG---AGCUCGCG- -5'
24263 3' -54.4 NC_005263.2 + 31613 0.74 0.346653
Target:  5'- gCCGGUcgCGACGgccgCGCggCGcAGCGCc -3'
miRNA:   3'- -GGCCAuaGCUGCaa--GCGgaGC-UCGCG- -5'
24263 3' -54.4 NC_005263.2 + 16906 0.73 0.379958
Target:  5'- gCGGUGUCGAC---CGUCUCGAacaacuuGCGCa -3'
miRNA:   3'- gGCCAUAGCUGcaaGCGGAGCU-------CGCG- -5'
24263 3' -54.4 NC_005263.2 + 24691 0.72 0.426623
Target:  5'- gCCGGUAaCGGCGgcgCGCCgaacgugcCGGGCGg -3'
miRNA:   3'- -GGCCAUaGCUGCaa-GCGGa-------GCUCGCg -5'
24263 3' -54.4 NC_005263.2 + 47275 0.72 0.445829
Target:  5'- cUCGGUAgUGACGUgcgCGCCga-AGCGCa -3'
miRNA:   3'- -GGCCAUaGCUGCAa--GCGGagcUCGCG- -5'
24263 3' -54.4 NC_005263.2 + 16582 0.71 0.465509
Target:  5'- gCCGGcggCGacGCGUUCGCCgggcUCGcGCGCg -3'
miRNA:   3'- -GGCCauaGC--UGCAAGCGG----AGCuCGCG- -5'
24263 3' -54.4 NC_005263.2 + 24785 0.71 0.465509
Target:  5'- gCGGcGUCGGCGgcUCGCCgggCGucggcGGCGCg -3'
miRNA:   3'- gGCCaUAGCUGCa-AGCGGa--GC-----UCGCG- -5'
24263 3' -54.4 NC_005263.2 + 19880 0.71 0.475517
Target:  5'- -aGGUAUCGAUGUUUGCCgaCGccGUGCc -3'
miRNA:   3'- ggCCAUAGCUGCAAGCGGa-GCu-CGCG- -5'
24263 3' -54.4 NC_005263.2 + 9137 0.71 0.47955
Target:  5'- gCCGGUcgcGUCGugGUUCGUCUCaugcuuGuuggccgugccgaucAGCGCg -3'
miRNA:   3'- -GGCCA---UAGCugCAAGCGGAG------C---------------UCGCG- -5'
24263 3' -54.4 NC_005263.2 + 691 0.7 0.516558
Target:  5'- cUCGGUGagcgCGAuCGUgcCGCCgcccgCGAGCGCc -3'
miRNA:   3'- -GGCCAUa---GCU-GCAa-GCGGa----GCUCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.