miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24263 3' -54.4 NC_005263.2 + 11945 1.14 0.000597
Target:  5'- gCCGGUAUCGACGUUCGCCUCGAGCGCg -3'
miRNA:   3'- -GGCCAUAGCUGCAAGCGGAGCUCGCG- -5'
24263 3' -54.4 NC_005263.2 + 32679 0.69 0.619726
Target:  5'- gCGGcgaUGUCGACGUgCGUCagcaggucggucaCGAGCGCa -3'
miRNA:   3'- gGCC---AUAGCUGCAaGCGGa------------GCUCGCG- -5'
24263 3' -54.4 NC_005263.2 + 28966 0.68 0.645966
Target:  5'- aUCGGUGUCG-CGgaa--UUCGGGCGCa -3'
miRNA:   3'- -GGCCAUAGCuGCaagcgGAGCUCGCG- -5'
24263 3' -54.4 NC_005263.2 + 1350 0.65 0.799594
Target:  5'- gCCGGUugcagaaucuuuuuGcCGGCGgcgGCCUugaaCGAGCGCa -3'
miRNA:   3'- -GGCCA--------------UaGCUGCaagCGGA----GCUCGCG- -5'
24263 3' -54.4 NC_005263.2 + 32786 0.77 0.23244
Target:  5'- cUCGGUGUCGGCccgCGCCUCGcGCaGCu -3'
miRNA:   3'- -GGCCAUAGCUGcaaGCGGAGCuCG-CG- -5'
24263 3' -54.4 NC_005263.2 + 20193 0.76 0.257655
Target:  5'- gCCGGg--CGACGcgcCGCCgUCGAGUGCu -3'
miRNA:   3'- -GGCCauaGCUGCaa-GCGG-AGCUCGCG- -5'
24263 3' -54.4 NC_005263.2 + 14037 0.74 0.322491
Target:  5'- aCGGU-UCGgccACGggCGCCgcgUCGAGCGCa -3'
miRNA:   3'- gGCCAuAGC---UGCaaGCGG---AGCUCGCG- -5'
24263 3' -54.4 NC_005263.2 + 31613 0.74 0.346653
Target:  5'- gCCGGUcgCGACGgccgCGCggCGcAGCGCc -3'
miRNA:   3'- -GGCCAuaGCUGCaa--GCGgaGC-UCGCG- -5'
24263 3' -54.4 NC_005263.2 + 9992 0.7 0.53761
Target:  5'- uCCGGU-UCGcCGUcuugcgCGCCaggugCGGGCGCa -3'
miRNA:   3'- -GGCCAuAGCuGCAa-----GCGGa----GCUCGCG- -5'
24263 3' -54.4 NC_005263.2 + 3901 0.69 0.613171
Target:  5'- aUGGUGUCGugGUagCGCC--GGGCGg -3'
miRNA:   3'- gGCCAUAGCugCAa-GCGGagCUCGCg -5'
24263 3' -54.4 NC_005263.2 + 22798 0.7 0.56971
Target:  5'- aUGGUGUCGaaGCGgUCGUUcaugCGGGCGCu -3'
miRNA:   3'- gGCCAUAGC--UGCaAGCGGa---GCUCGCG- -5'
24263 3' -54.4 NC_005263.2 + 691 0.7 0.516558
Target:  5'- cUCGGUGagcgCGAuCGUgcCGCCgcccgCGAGCGCc -3'
miRNA:   3'- -GGCCAUa---GCU-GCAa-GCGGa----GCUCGCG- -5'
24263 3' -54.4 NC_005263.2 + 33403 0.91 0.025696
Target:  5'- uCCGG-AUCGGCGUcgaUCGCCUUGAGCGCc -3'
miRNA:   3'- -GGCCaUAGCUGCA---AGCGGAGCUCGCG- -5'
24263 3' -54.4 NC_005263.2 + 19867 0.69 0.602259
Target:  5'- -aGGUcaCGGCGagCGCggCGAGCGCg -3'
miRNA:   3'- ggCCAuaGCUGCaaGCGgaGCUCGCG- -5'
24263 3' -54.4 NC_005263.2 + 12678 0.79 0.155805
Target:  5'- gCCGGgGUCGuCGUUCGCgUCGAGCu- -3'
miRNA:   3'- -GGCCaUAGCuGCAAGCGgAGCUCGcg -5'
24263 3' -54.4 NC_005263.2 + 47275 0.72 0.445829
Target:  5'- cUCGGUAgUGACGUgcgCGCCga-AGCGCa -3'
miRNA:   3'- -GGCCAUaGCUGCAa--GCGGagcUCGCG- -5'
24263 3' -54.4 NC_005263.2 + 21821 0.69 0.602259
Target:  5'- aCCGGgcucaucgAUUGGCGcaaagCGCCaucUUGGGCGCa -3'
miRNA:   3'- -GGCCa-------UAGCUGCaa---GCGG---AGCUCGCG- -5'
24263 3' -54.4 NC_005263.2 + 29154 0.68 0.645966
Target:  5'- gCCGGcugCGcuCGUaaccggCGCgCUCGAGCGCu -3'
miRNA:   3'- -GGCCauaGCu-GCAa-----GCG-GAGCUCGCG- -5'
24263 3' -54.4 NC_005263.2 + 17003 0.77 0.220631
Target:  5'- gCCgGGUGUCGaaGCGUUCGUaucgCUCGAGCaGCg -3'
miRNA:   3'- -GG-CCAUAGC--UGCAAGCG----GAGCUCG-CG- -5'
24263 3' -54.4 NC_005263.2 + 3083 0.76 0.27108
Target:  5'- -aGGcGUCGGCGaucUUCGCCUCGuucgacAGCGCg -3'
miRNA:   3'- ggCCaUAGCUGC---AAGCGGAGC------UCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.