miRNA display CGI


Results 1 - 20 of 82 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24263 3' -54.4 NC_005263.2 + 659 0.7 0.527045
Target:  5'- gCCGGccagAUCGAacgccucauCGUagcgCGCCUugcCGAGCGCg -3'
miRNA:   3'- -GGCCa---UAGCU---------GCAa---GCGGA---GCUCGCG- -5'
24263 3' -54.4 NC_005263.2 + 691 0.7 0.516558
Target:  5'- cUCGGUGagcgCGAuCGUgcCGCCgcccgCGAGCGCc -3'
miRNA:   3'- -GGCCAUa---GCU-GCAa-GCGGa----GCUCGCG- -5'
24263 3' -54.4 NC_005263.2 + 1165 0.68 0.689469
Target:  5'- gCCcGUcgCGGCGacuugUGCCUCGugcuGCGCg -3'
miRNA:   3'- -GGcCAuaGCUGCaa---GCGGAGCu---CGCG- -5'
24263 3' -54.4 NC_005263.2 + 1350 0.65 0.799594
Target:  5'- gCCGGUugcagaaucuuuuuGcCGGCGgcgGCCUugaaCGAGCGCa -3'
miRNA:   3'- -GGCCA--------------UaGCUGCaagCGGA----GCUCGCG- -5'
24263 3' -54.4 NC_005263.2 + 2477 0.66 0.76307
Target:  5'- gCCGcGUuguucgugacgAUCGACGc-UGCCUCGAgaucggGCGCg -3'
miRNA:   3'- -GGC-CA-----------UAGCUGCaaGCGGAGCU------CGCG- -5'
24263 3' -54.4 NC_005263.2 + 3083 0.76 0.27108
Target:  5'- -aGGcGUCGGCGaucUUCGCCUCGuucgacAGCGCg -3'
miRNA:   3'- ggCCaUAGCUGC---AAGCGGAGC------UCGCG- -5'
24263 3' -54.4 NC_005263.2 + 3374 0.68 0.667783
Target:  5'- gCGGaacaaUGUCGACGggcgUCGCCgucguugCGGGCa- -3'
miRNA:   3'- gGCC-----AUAGCUGCa---AGCGGa------GCUCGcg -5'
24263 3' -54.4 NC_005263.2 + 3901 0.69 0.613171
Target:  5'- aUGGUGUCGugGUagCGCC--GGGCGg -3'
miRNA:   3'- gGCCAUAGCugCAa-GCGGagCUCGCg -5'
24263 3' -54.4 NC_005263.2 + 5956 0.67 0.731048
Target:  5'- aCCGGcaacuggcgcaccUcgCGACa--CGCCUCGcGCGCa -3'
miRNA:   3'- -GGCC-------------AuaGCUGcaaGCGGAGCuCGCG- -5'
24263 3' -54.4 NC_005263.2 + 6633 0.66 0.791878
Target:  5'- gCGGUcgagcaGUCGcGCGUcggUCGCUUCacgugcgGGGCGCa -3'
miRNA:   3'- gGCCA------UAGC-UGCA---AGCGGAG-------CUCGCG- -5'
24263 3' -54.4 NC_005263.2 + 9137 0.71 0.47955
Target:  5'- gCCGGUcgcGUCGugGUUCGUCUCaugcuuGuuggccgugccgaucAGCGCg -3'
miRNA:   3'- -GGCCA---UAGCugCAAGCGGAG------C---------------UCGCG- -5'
24263 3' -54.4 NC_005263.2 + 9222 0.66 0.76307
Target:  5'- aCGGUgccGUCGGCGUUCaGCacggCGAacGUGCc -3'
miRNA:   3'- gGCCA---UAGCUGCAAG-CGga--GCU--CGCG- -5'
24263 3' -54.4 NC_005263.2 + 9638 0.67 0.700235
Target:  5'- gCGGUAaaUCuGGCuugCGCUgUCGAGCGCa -3'
miRNA:   3'- gGCCAU--AG-CUGcaaGCGG-AGCUCGCG- -5'
24263 3' -54.4 NC_005263.2 + 9715 0.68 0.645966
Target:  5'- aCaGUgcGUCGAUcaGUUCgGCCUCGGGCGg -3'
miRNA:   3'- gGcCA--UAGCUG--CAAG-CGGAGCUCGCg -5'
24263 3' -54.4 NC_005263.2 + 9948 0.67 0.72156
Target:  5'- cCCGGcauuUCGuCGUcuUCGCUgcccugCGGGUGCg -3'
miRNA:   3'- -GGCCau--AGCuGCA--AGCGGa-----GCUCGCG- -5'
24263 3' -54.4 NC_005263.2 + 9992 0.7 0.53761
Target:  5'- uCCGGU-UCGcCGUcuugcgCGCCaggugCGGGCGCa -3'
miRNA:   3'- -GGCCAuAGCuGCAa-----GCGGa----GCUCGCG- -5'
24263 3' -54.4 NC_005263.2 + 10157 0.69 0.602259
Target:  5'- gCGGgcagcUUGGCG-UCGCCgaGAGCGCg -3'
miRNA:   3'- gGCCau---AGCUGCaAGCGGagCUCGCG- -5'
24263 3' -54.4 NC_005263.2 + 10731 0.66 0.783073
Target:  5'- gCCaGGg--CGACGca-GaCUCGAGCGCa -3'
miRNA:   3'- -GG-CCauaGCUGCaagCgGAGCUCGCG- -5'
24263 3' -54.4 NC_005263.2 + 11945 1.14 0.000597
Target:  5'- gCCGGUAUCGACGUUCGCCUCGAGCGCg -3'
miRNA:   3'- -GGCCAUAGCUGCAAGCGGAGCUCGCG- -5'
24263 3' -54.4 NC_005263.2 + 12678 0.79 0.155805
Target:  5'- gCCGGgGUCGuCGUUCGCgUCGAGCu- -3'
miRNA:   3'- -GGCCaUAGCuGCAAGCGgAGCUCGcg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.