miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24267 3' -55.3 NC_005263.2 + 29746 0.66 0.707795
Target:  5'- uUCAUGGcgauuucGACGGUgcggaagCGgcucacuuguUGCGCACCGUu -3'
miRNA:   3'- -AGUACCua-----CUGCCA-------GC----------ACGCGUGGCG- -5'
24267 3' -55.3 NC_005263.2 + 6513 0.66 0.687182
Target:  5'- gCGUuGAaGcCGGUCGUGaGCAUCGCg -3'
miRNA:   3'- aGUAcCUaCuGCCAGCACgCGUGGCG- -5'
24267 3' -55.3 NC_005263.2 + 14166 0.66 0.687182
Target:  5'- cUUcgGGccGGCGGccggUGUGCGCgaGCUGCg -3'
miRNA:   3'- -AGuaCCuaCUGCCa---GCACGCG--UGGCG- -5'
24267 3' -55.3 NC_005263.2 + 24945 0.66 0.687182
Target:  5'- ---cGGcgGACGG-CgGUGCGCGguUCGCa -3'
miRNA:   3'- aguaCCuaCUGCCaG-CACGCGU--GGCG- -5'
24267 3' -55.3 NC_005263.2 + 29006 0.66 0.676252
Target:  5'- ---cGGccGAcCGGcagugCGuUGCGCACCGCg -3'
miRNA:   3'- aguaCCuaCU-GCCa----GC-ACGCGUGGCG- -5'
24267 3' -55.3 NC_005263.2 + 6615 0.66 0.665279
Target:  5'- cCGUGGAUcacGACGGcCGacuCGC-CCGCg -3'
miRNA:   3'- aGUACCUA---CUGCCaGCac-GCGuGGCG- -5'
24267 3' -55.3 NC_005263.2 + 29295 0.66 0.665279
Target:  5'- gCAcGGcgGcCgGGUCGgcaUGCGCAUCGCg -3'
miRNA:   3'- aGUaCCuaCuG-CCAGC---ACGCGUGGCG- -5'
24267 3' -55.3 NC_005263.2 + 7702 0.67 0.621182
Target:  5'- ---cGGccGcGCGG-CGUGUGCACCGUu -3'
miRNA:   3'- aguaCCuaC-UGCCaGCACGCGUGGCG- -5'
24267 3' -55.3 NC_005263.2 + 22905 0.67 0.621182
Target:  5'- uUCGUGccgGACGGagGUGCccaaGCugCGCg -3'
miRNA:   3'- -AGUACcuaCUGCCagCACG----CGugGCG- -5'
24267 3' -55.3 NC_005263.2 + 29914 0.68 0.555497
Target:  5'- gCGUGcccGAauGCGGaCGUaGCGCGCCGCa -3'
miRNA:   3'- aGUAC---CUacUGCCaGCA-CGCGUGGCG- -5'
24267 3' -55.3 NC_005263.2 + 41168 0.68 0.555497
Target:  5'- gCGUGGgcGGCcGUCGUcgauacguuGCGCGCUGUg -3'
miRNA:   3'- aGUACCuaCUGcCAGCA---------CGCGUGGCG- -5'
24267 3' -55.3 NC_005263.2 + 38127 0.69 0.512817
Target:  5'- ---cGGcgaaccgGACGG-CGUGCGCAgcCCGCa -3'
miRNA:   3'- aguaCCua-----CUGCCaGCACGCGU--GGCG- -5'
24267 3' -55.3 NC_005263.2 + 22361 0.69 0.512817
Target:  5'- aUCAcgcgGGcgGACaGGUCGUGCaCGgCGCg -3'
miRNA:   3'- -AGUa---CCuaCUG-CCAGCACGcGUgGCG- -5'
24267 3' -55.3 NC_005263.2 + 19034 0.69 0.491982
Target:  5'- -------cGACGGcCGaUGCGCGCCGCc -3'
miRNA:   3'- aguaccuaCUGCCaGC-ACGCGUGGCG- -5'
24267 3' -55.3 NC_005263.2 + 19802 0.69 0.491982
Target:  5'- -gAUGGGUGcCGGUCGcacgGCcgGUACUGCa -3'
miRNA:   3'- agUACCUACuGCCAGCa---CG--CGUGGCG- -5'
24267 3' -55.3 NC_005263.2 + 40856 0.7 0.441727
Target:  5'- aCAUcGuUGACGGUCGagagccucgcGUGCACCGCa -3'
miRNA:   3'- aGUAcCuACUGCCAGCa---------CGCGUGGCG- -5'
24267 3' -55.3 NC_005263.2 + 20047 0.7 0.432026
Target:  5'- -aAUGGAUcgcGGCGGUCGUucaGCACaCGCu -3'
miRNA:   3'- agUACCUA---CUGCCAGCAcg-CGUG-GCG- -5'
24267 3' -55.3 NC_005263.2 + 16759 0.71 0.403689
Target:  5'- uUUAUGGAgucgcgccUGACGGcCGccgGCGUAUCGCc -3'
miRNA:   3'- -AGUACCU--------ACUGCCaGCa--CGCGUGGCG- -5'
24267 3' -55.3 NC_005263.2 + 14433 0.72 0.34234
Target:  5'- cCAUGc--GACGG-CGUGCGCGCgCGCc -3'
miRNA:   3'- aGUACcuaCUGCCaGCACGCGUG-GCG- -5'
24267 3' -55.3 NC_005263.2 + 29690 0.72 0.34234
Target:  5'- -aGUGGA--ACGGcgucaggaUCGUGCGCACcCGCg -3'
miRNA:   3'- agUACCUacUGCC--------AGCACGCGUG-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.