Results 1 - 20 of 208 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24284 | 3' | -66.7 | NC_005263.2 | + | 21911 | 1.07 | 0.000119 |
Target: 5'- cCGCAUCGCGCGGCCGCCGCGCGGCCGc -3' miRNA: 3'- -GCGUAGCGCGCCGGCGGCGCGCCGGC- -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 26192 | 0.79 | 0.020424 |
Target: 5'- uGCGgcCGCGCGGCgGCCGCgcgaugcgGCGGCCGu -3' miRNA: 3'- gCGUa-GCGCGCCGgCGGCG--------CGCCGGC- -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 2342 | 0.79 | 0.020424 |
Target: 5'- aGCAcCGUGCGGCCGuuGCGCaGCUGg -3' miRNA: 3'- gCGUaGCGCGCCGGCggCGCGcCGGC- -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 1633 | 0.79 | 0.022124 |
Target: 5'- aCGCGUCGUcgGCGGCguagcccuggaugCGCUGCGCGGUCGg -3' miRNA: 3'- -GCGUAGCG--CGCCG-------------GCGGCGCGCCGGC- -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 18135 | 0.78 | 0.024769 |
Target: 5'- gCGCugAUCGCGCugcccGCCGCUGCGCaGGCCGa -3' miRNA: 3'- -GCG--UAGCGCGc----CGGCGGCGCG-CCGGC- -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 20719 | 0.78 | 0.026679 |
Target: 5'- aCGCAgccggucagCGCGcCGGCCGCCGCcgcgccgcucgcugGCGGCCu -3' miRNA: 3'- -GCGUa--------GCGC-GCCGGCGGCG--------------CGCCGGc -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 16493 | 0.77 | 0.02765 |
Target: 5'- uGCGcCGCGCGGCCGUCGCGacCGGCa- -3' miRNA: 3'- gCGUaGCGCGCCGGCGGCGC--GCCGgc -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 35991 | 0.77 | 0.02842 |
Target: 5'- gCGCGUaauggCGCGCGcGCCGCUGCGCaugccaGGCCGc -3' miRNA: 3'- -GCGUA-----GCGCGC-CGGCGGCGCG------CCGGC- -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 22679 | 0.77 | 0.031718 |
Target: 5'- gCGguUCGUGCGGCCGCCGa-CGGuuGa -3' miRNA: 3'- -GCguAGCGCGCCGGCGGCgcGCCggC- -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 14136 | 0.77 | 0.03251 |
Target: 5'- cCGCAgcggccaGCGCGGCCGCCuuggcgacuucggGCcgGCGGCCGg -3' miRNA: 3'- -GCGUag-----CGCGCCGGCGG-------------CG--CGCCGGC- -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 41543 | 0.76 | 0.037382 |
Target: 5'- gCGCAaaCGCGCGGCgCGCCGUgGCGGCg- -3' miRNA: 3'- -GCGUa-GCGCGCCG-GCGGCG-CGCCGgc -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 33846 | 0.76 | 0.038418 |
Target: 5'- gCGCGUUGCGcCGGCCGCCGCaa-GCCa -3' miRNA: 3'- -GCGUAGCGC-GCCGGCGGCGcgcCGGc -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 37414 | 0.76 | 0.039916 |
Target: 5'- uCGCGUCGCGCGGCCGUccucguCgucauacgucggcgcGCGCGGUCu -3' miRNA: 3'- -GCGUAGCGCGCCGGCG------G---------------CGCGCCGGc -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 21433 | 0.75 | 0.042851 |
Target: 5'- gCGCAUCaauGgGCGGCCGUCGCGCguaucuggaacGGCCc -3' miRNA: 3'- -GCGUAG---CgCGCCGGCGGCGCG-----------CCGGc -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 29038 | 0.75 | 0.044035 |
Target: 5'- aCGCAccaGCGCGcGCagGCCGCGCGGCgCGu -3' miRNA: 3'- -GCGUag-CGCGC-CGg-CGGCGCGCCG-GC- -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 13842 | 0.75 | 0.045251 |
Target: 5'- uGCAUCGCGCGGUacucgggcaGCUGCGCGaGCa- -3' miRNA: 3'- gCGUAGCGCGCCGg--------CGGCGCGC-CGgc -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 33993 | 0.75 | 0.045251 |
Target: 5'- gGCuacgAUCGCGaCGGCgacCGCCGCGCaGCCGg -3' miRNA: 3'- gCG----UAGCGC-GCCG---GCGGCGCGcCGGC- -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 44665 | 0.74 | 0.047782 |
Target: 5'- uGCGUCGCGCGcGCCGaaGaagucgGCGGCCa -3' miRNA: 3'- gCGUAGCGCGC-CGGCggCg-----CGCCGGc -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 9519 | 0.74 | 0.047782 |
Target: 5'- gGCugaAUCGUGCGGCCG-UGCGCGGCa- -3' miRNA: 3'- gCG---UAGCGCGCCGGCgGCGCGCCGgc -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 42561 | 0.74 | 0.049099 |
Target: 5'- uGCAuUCGCGCcaGGCCGuuGC-CGGCCa -3' miRNA: 3'- gCGU-AGCGCG--CCGGCggCGcGCCGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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