miRNA display CGI


Results 21 - 40 of 208 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24284 3' -66.7 NC_005263.2 + 17743 0.74 0.049099
Target:  5'- uCGCAcUCgGCGcCGGCgGCaGCGCGGCCGc -3'
miRNA:   3'- -GCGU-AG-CGC-GCCGgCGgCGCGCCGGC- -5'
24284 3' -66.7 NC_005263.2 + 42561 0.74 0.049099
Target:  5'- uGCAuUCGCGCcaGGCCGuuGC-CGGCCa -3'
miRNA:   3'- gCGU-AGCGCG--CCGGCggCGcGCCGGc -5'
24284 3' -66.7 NC_005263.2 + 19061 0.74 0.049636
Target:  5'- aCGCGcCGCGCGGCCuGCgCGCGCuggugcgucuugcagGGCUGg -3'
miRNA:   3'- -GCGUaGCGCGCCGG-CG-GCGCG---------------CCGGC- -5'
24284 3' -66.7 NC_005263.2 + 38573 0.74 0.050451
Target:  5'- cCGCGUCG-GUcGCUGCCGCGCacGGCCGc -3'
miRNA:   3'- -GCGUAGCgCGcCGGCGGCGCG--CCGGC- -5'
24284 3' -66.7 NC_005263.2 + 6939 0.74 0.050451
Target:  5'- aCGUAUCGaCGaCGGCCgcccacGCCGCGCGaacGCCGg -3'
miRNA:   3'- -GCGUAGC-GC-GCCGG------CGGCGCGC---CGGC- -5'
24284 3' -66.7 NC_005263.2 + 6604 0.74 0.056231
Target:  5'- aCGCgAUCGCguucgGCGGCgCGCUcgGCGCGGUCGa -3'
miRNA:   3'- -GCG-UAGCG-----CGCCG-GCGG--CGCGCCGGC- -5'
24284 3' -66.7 NC_005263.2 + 22389 0.73 0.059197
Target:  5'- gGCAUCGgGCaGGCCGCgaacguaCGCGCcGCCGu -3'
miRNA:   3'- gCGUAGCgCG-CCGGCG-------GCGCGcCGGC- -5'
24284 3' -66.7 NC_005263.2 + 33932 0.73 0.062146
Target:  5'- aGCAgcUCGCGCacaccGGCCGCCGgCccgaagucgccaagGCGGCCGc -3'
miRNA:   3'- gCGU--AGCGCG-----CCGGCGGC-G--------------CGCCGGC- -5'
24284 3' -66.7 NC_005263.2 + 44773 0.73 0.062482
Target:  5'- gCGCggCGCcgGCGGCgCGCagacguugaacacCGCGCGGCCGc -3'
miRNA:   3'- -GCGuaGCG--CGCCG-GCG-------------GCGCGCCGGC- -5'
24284 3' -66.7 NC_005263.2 + 9758 0.73 0.062651
Target:  5'- gCGCAuuUCGC-CGGUCGCCGCGUgcacGGUCGc -3'
miRNA:   3'- -GCGU--AGCGcGCCGGCGGCGCG----CCGGC- -5'
24284 3' -66.7 NC_005263.2 + 3510 0.73 0.066121
Target:  5'- uGUcgCGCGCGGCaaucuucuucagCGUCuCGCGGCCGg -3'
miRNA:   3'- gCGuaGCGCGCCG------------GCGGcGCGCCGGC- -5'
24284 3' -66.7 NC_005263.2 + 17651 0.73 0.066121
Target:  5'- gCGCAaCGCGaaGGCCGCCGCGCucacGCUGc -3'
miRNA:   3'- -GCGUaGCGCg-CCGGCGGCGCGc---CGGC- -5'
24284 3' -66.7 NC_005263.2 + 16357 0.73 0.066121
Target:  5'- aCGaagCGCGCGGCCGCguCGCucggcgGCGGCCu -3'
miRNA:   3'- -GCguaGCGCGCCGGCG--GCG------CGCCGGc -5'
24284 3' -66.7 NC_005263.2 + 32740 0.72 0.069776
Target:  5'- aCGUA-CGCGCuGCCGCuUGCGCGGCg- -3'
miRNA:   3'- -GCGUaGCGCGcCGGCG-GCGCGCCGgc -5'
24284 3' -66.7 NC_005263.2 + 30337 0.72 0.071676
Target:  5'- uGCGagaaGCGCGuGCCGa-GCGCGGCCGc -3'
miRNA:   3'- gCGUag--CGCGC-CGGCggCGCGCCGGC- -5'
24284 3' -66.7 NC_005263.2 + 8848 0.72 0.071676
Target:  5'- aGCAUCGCGCGcaGCUcgGCCGacgggauaCGCGGCCc -3'
miRNA:   3'- gCGUAGCGCGC--CGG--CGGC--------GCGCCGGc -5'
24284 3' -66.7 NC_005263.2 + 29020 0.72 0.073626
Target:  5'- uGCGUUGCGCaccgcgacGCCGUacugaCGCGCGGCCu -3'
miRNA:   3'- gCGUAGCGCGc-------CGGCG-----GCGCGCCGGc -5'
24284 3' -66.7 NC_005263.2 + 24530 0.72 0.073626
Target:  5'- aCGUAUCGgGCaacGGCgGCgGCGCGGgCGg -3'
miRNA:   3'- -GCGUAGCgCG---CCGgCGgCGCGCCgGC- -5'
24284 3' -66.7 NC_005263.2 + 15558 0.72 0.073626
Target:  5'- gCGCAgaCGCGCGcGCugaaCGCCgaaugacgguaGCGCGGCCGg -3'
miRNA:   3'- -GCGUa-GCGCGC-CG----GCGG-----------CGCGCCGGC- -5'
24284 3' -66.7 NC_005263.2 + 28933 0.72 0.073626
Target:  5'- ----aCGCGCGGCCacgaGCCGCGCcGGCgGa -3'
miRNA:   3'- gcguaGCGCGCCGG----CGGCGCG-CCGgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.