miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24287 3' -54.1 NC_005263.2 + 13750 0.66 0.793676
Target:  5'- cGCCGGCGGCcaggccgGAUGUgUCGGcuuucucuUUCGUGCc -3'
miRNA:   3'- -UGGCUGCUG-------CUGCA-AGCCc-------AAGCACG- -5'
24287 3' -54.1 NC_005263.2 + 25067 0.66 0.774929
Target:  5'- cCCGACGuCGACcggcaaUUCGGGUggCGcugGCa -3'
miRNA:   3'- uGGCUGCuGCUGc-----AAGCCCAa-GCa--CG- -5'
24287 3' -54.1 NC_005263.2 + 40995 0.66 0.764845
Target:  5'- cGCaCGGCaGGCGAaaCGuUUCGGGccguucgacUUCGUGCu -3'
miRNA:   3'- -UG-GCUG-CUGCU--GC-AAGCCC---------AAGCACG- -5'
24287 3' -54.1 NC_005263.2 + 23047 0.66 0.764845
Target:  5'- uGCCGGu--CGACG-UCGGGaucgUCGUGUu -3'
miRNA:   3'- -UGGCUgcuGCUGCaAGCCCa---AGCACG- -5'
24287 3' -54.1 NC_005263.2 + 9493 0.66 0.764845
Target:  5'- cGCCGGCGcuauccauCG-CGUgcgCGGGcugaaUCGUGCg -3'
miRNA:   3'- -UGGCUGCu-------GCuGCAa--GCCCa----AGCACG- -5'
24287 3' -54.1 NC_005263.2 + 26893 0.67 0.754625
Target:  5'- aGCCGGuCGACGACa---GGaUUUGUGCa -3'
miRNA:   3'- -UGGCU-GCUGCUGcaagCCcAAGCACG- -5'
24287 3' -54.1 NC_005263.2 + 27887 0.67 0.744281
Target:  5'- gGCCGGCGGCG-CGcagUCGGGcaaagcacUCGacgGCg -3'
miRNA:   3'- -UGGCUGCUGCuGCa--AGCCCa-------AGCa--CG- -5'
24287 3' -54.1 NC_005263.2 + 23437 0.67 0.744281
Target:  5'- cGCuCGAUGuuCGGCGaUCGGGgugaGUGCu -3'
miRNA:   3'- -UG-GCUGCu-GCUGCaAGCCCaag-CACG- -5'
24287 3' -54.1 NC_005263.2 + 2599 0.67 0.733823
Target:  5'- gAUCGAgCGuuuCGACGUagcccUCGGGUUUGUcGUa -3'
miRNA:   3'- -UGGCU-GCu--GCUGCA-----AGCCCAAGCA-CG- -5'
24287 3' -54.1 NC_005263.2 + 8457 0.67 0.733823
Target:  5'- ---uACGACuGACGUUgCGGGUaguugauguUCGUGCc -3'
miRNA:   3'- uggcUGCUG-CUGCAA-GCCCA---------AGCACG- -5'
24287 3' -54.1 NC_005263.2 + 18162 0.67 0.712616
Target:  5'- uAUCGGCGGCGGCGUuggCGGcaUCGUc- -3'
miRNA:   3'- -UGGCUGCUGCUGCAa--GCCcaAGCAcg -5'
24287 3' -54.1 NC_005263.2 + 46485 0.67 0.712616
Target:  5'- cGCCGACGACG-CGUUCGacc-CGgaUGCg -3'
miRNA:   3'- -UGGCUGCUGCuGCAAGCccaaGC--ACG- -5'
24287 3' -54.1 NC_005263.2 + 14028 0.68 0.701889
Target:  5'- -gCGACGGCGACGgUUCGGccaCGgGCg -3'
miRNA:   3'- ugGCUGCUGCUGC-AAGCCcaaGCaCG- -5'
24287 3' -54.1 NC_005263.2 + 25494 0.68 0.701889
Target:  5'- uCCGACGAUugGACGUUCGucauGGU-CG-GCg -3'
miRNA:   3'- uGGCUGCUG--CUGCAAGC----CCAaGCaCG- -5'
24287 3' -54.1 NC_005263.2 + 17142 0.68 0.691094
Target:  5'- cUCGGCGAagcgguCGACGUcgCGGuGUUCGgcugGCa -3'
miRNA:   3'- uGGCUGCU------GCUGCAa-GCC-CAAGCa---CG- -5'
24287 3' -54.1 NC_005263.2 + 35538 0.68 0.691094
Target:  5'- cCCGGCGGCGcGCGggCGGGcgCuacgGCg -3'
miRNA:   3'- uGGCUGCUGC-UGCaaGCCCaaGca--CG- -5'
24287 3' -54.1 NC_005263.2 + 4657 0.68 0.691094
Target:  5'- -gCGACGGgcaggcCGGCGcgCGGGUcuuucgucaggaUCGUGCc -3'
miRNA:   3'- ugGCUGCU------GCUGCaaGCCCA------------AGCACG- -5'
24287 3' -54.1 NC_005263.2 + 1423 0.68 0.680243
Target:  5'- uGCCGACGGCcGgGUUCGuaaucgugaGGUcuugcugcaguuUCGUGCg -3'
miRNA:   3'- -UGGCUGCUGcUgCAAGC---------CCA------------AGCACG- -5'
24287 3' -54.1 NC_005263.2 + 29055 0.68 0.669346
Target:  5'- gGCCGcGCGGCG-CGUccUCGGGgcggCGcGCa -3'
miRNA:   3'- -UGGC-UGCUGCuGCA--AGCCCaa--GCaCG- -5'
24287 3' -54.1 NC_005263.2 + 32879 0.68 0.669346
Target:  5'- uGCCGGCgGGCGGCGaguUUCGuGGcgUCG-GCg -3'
miRNA:   3'- -UGGCUG-CUGCUGC---AAGC-CCa-AGCaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.