miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24293 3' -55.4 NC_005263.2 + 27428 1.07 0.001048
Target:  5'- cUGUCGCGUCGCGCUCGGCAAACACUGc -3'
miRNA:   3'- -ACAGCGCAGCGCGAGCCGUUUGUGAC- -5'
24293 3' -55.4 NC_005263.2 + 44011 0.79 0.120457
Target:  5'- cUGUCGCGUC-CGCUCGGCAaggGugGCg- -3'
miRNA:   3'- -ACAGCGCAGcGCGAGCCGU---UugUGac -5'
24293 3' -55.4 NC_005263.2 + 22830 0.77 0.146668
Target:  5'- cUGUCGCG-CGCGCggaUCGGCAuGCAgCUGa -3'
miRNA:   3'- -ACAGCGCaGCGCG---AGCCGUuUGU-GAC- -5'
24293 3' -55.4 NC_005263.2 + 17759 0.76 0.173168
Target:  5'- cGgcagCGCGgcCGCGCUCGGCAcGCGCUu -3'
miRNA:   3'- aCa---GCGCa-GCGCGAGCCGUuUGUGAc -5'
24293 3' -55.4 NC_005263.2 + 46173 0.76 0.17798
Target:  5'- cGUCGcCGgugccggCGCGCUCGuGCAGACGCg- -3'
miRNA:   3'- aCAGC-GCa------GCGCGAGC-CGUUUGUGac -5'
24293 3' -55.4 NC_005263.2 + 10937 0.76 0.193135
Target:  5'- -aUCGCGUCGUGCggGGUGAGCGCUu -3'
miRNA:   3'- acAGCGCAGCGCGagCCGUUUGUGAc -5'
24293 3' -55.4 NC_005263.2 + 15193 0.75 0.198432
Target:  5'- aG-CGCGcCGCGCgacgUCGGCAAGCGCUu -3'
miRNA:   3'- aCaGCGCaGCGCG----AGCCGUUUGUGAc -5'
24293 3' -55.4 NC_005263.2 + 43234 0.75 0.226851
Target:  5'- cUGUUGCGauuggcugaCGCGCUCGGCGuAACGCUc -3'
miRNA:   3'- -ACAGCGCa--------GCGCGAGCCGU-UUGUGAc -5'
24293 3' -55.4 NC_005263.2 + 29314 0.74 0.239151
Target:  5'- aUG-CGCaUCGCGCgCGGCGAGCACg- -3'
miRNA:   3'- -ACaGCGcAGCGCGaGCCGUUUGUGac -5'
24293 3' -55.4 NC_005263.2 + 47412 0.73 0.271644
Target:  5'- cGUCGaguucauCGgCGCGCUCGGCAAggcGCGCUa -3'
miRNA:   3'- aCAGC-------GCaGCGCGAGCCGUU---UGUGAc -5'
24293 3' -55.4 NC_005263.2 + 6602 0.73 0.272343
Target:  5'- cGaCGCGaUCGCGUUCGGCGGcGCGCUc -3'
miRNA:   3'- aCaGCGC-AGCGCGAGCCGUU-UGUGAc -5'
24293 3' -55.4 NC_005263.2 + 11888 0.73 0.293237
Target:  5'- -cUCGCGccgaaucUCGUGCUCGuGCAGGCGCUc -3'
miRNA:   3'- acAGCGC-------AGCGCGAGC-CGUUUGUGAc -5'
24293 3' -55.4 NC_005263.2 + 23914 0.72 0.309135
Target:  5'- gGUCGCGcgcaUCGCuugguggcugauGCUCGGCGGGCAUUc -3'
miRNA:   3'- aCAGCGC----AGCG------------CGAGCCGUUUGUGAc -5'
24293 3' -55.4 NC_005263.2 + 36643 0.72 0.316933
Target:  5'- aGUgCGCGgcagCGCgaGCUCGGCuuGCAUUGg -3'
miRNA:   3'- aCA-GCGCa---GCG--CGAGCCGuuUGUGAC- -5'
24293 3' -55.4 NC_005263.2 + 45106 0.72 0.324878
Target:  5'- cGUCGCGgcggaUGCGC-CGGCGAGCGuCUa -3'
miRNA:   3'- aCAGCGCa----GCGCGaGCCGUUUGU-GAc -5'
24293 3' -55.4 NC_005263.2 + 37724 0.72 0.332971
Target:  5'- gUGcCG-GUCauGCGCUCGGgAGACGCUGa -3'
miRNA:   3'- -ACaGCgCAG--CGCGAGCCgUUUGUGAC- -5'
24293 3' -55.4 NC_005263.2 + 47677 0.71 0.357268
Target:  5'- cGUCGCGgcgauccUCGUGCUgugCGGCAAgcugcucggcACGCUGa -3'
miRNA:   3'- aCAGCGC-------AGCGCGA---GCCGUU----------UGUGAC- -5'
24293 3' -55.4 NC_005263.2 + 11812 0.71 0.358128
Target:  5'- gUGUCGCugcauGUCGUgGCUCGGCGAGguCUa -3'
miRNA:   3'- -ACAGCG-----CAGCG-CGAGCCGUUUguGAc -5'
24293 3' -55.4 NC_005263.2 + 47260 0.71 0.358128
Target:  5'- gGUaCGCuGUcCGCGCUCGGUAGugACg- -3'
miRNA:   3'- aCA-GCG-CA-GCGCGAGCCGUUugUGac -5'
24293 3' -55.4 NC_005263.2 + 20799 0.71 0.358128
Target:  5'- cGUCGgGUCGCGCcgugguauuUCuGCAGGCGCg- -3'
miRNA:   3'- aCAGCgCAGCGCG---------AGcCGUUUGUGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.