miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24293 3' -55.4 NC_005263.2 + 27428 1.07 0.001048
Target:  5'- cUGUCGCGUCGCGCUCGGCAAACACUGc -3'
miRNA:   3'- -ACAGCGCAGCGCGAGCCGUUUGUGAC- -5'
24293 3' -55.4 NC_005263.2 + 30718 0.68 0.545015
Target:  5'- aGgcgCGCGgcCGCGC-CGGCAGACAg-- -3'
miRNA:   3'- aCa--GCGCa-GCGCGaGCCGUUUGUgac -5'
24293 3' -55.4 NC_005263.2 + 3770 0.67 0.577792
Target:  5'- aUGUCGaCGUCGCGUUCuGGUcgGC-CUu -3'
miRNA:   3'- -ACAGC-GCAGCGCGAG-CCGuuUGuGAc -5'
24293 3' -55.4 NC_005263.2 + 14116 0.66 0.681995
Target:  5'- gGUCGcCGUCGCGaucguagccgcagCGGCcAGCGCg- -3'
miRNA:   3'- aCAGC-GCAGCGCga-----------GCCGuUUGUGac -5'
24293 3' -55.4 NC_005263.2 + 6602 0.73 0.272343
Target:  5'- cGaCGCGaUCGCGUUCGGCGGcGCGCUc -3'
miRNA:   3'- aCaGCGC-AGCGCGAGCCGUU-UGUGAc -5'
24293 3' -55.4 NC_005263.2 + 47677 0.71 0.357268
Target:  5'- cGUCGCGgcgauccUCGUGCUgugCGGCAAgcugcucggcACGCUGa -3'
miRNA:   3'- aCAGCGC-------AGCGCGA---GCCGUU----------UGUGAC- -5'
24293 3' -55.4 NC_005263.2 + 47260 0.71 0.358128
Target:  5'- gGUaCGCuGUcCGCGCUCGGUAGugACg- -3'
miRNA:   3'- aCA-GCG-CA-GCGCGAGCCGUUugUGac -5'
24293 3' -55.4 NC_005263.2 + 26525 0.71 0.358128
Target:  5'- ---gGCGUCGaCGCcggCGGCGAGCACg- -3'
miRNA:   3'- acagCGCAGC-GCGa--GCCGUUUGUGac -5'
24293 3' -55.4 NC_005263.2 + 25376 0.71 0.375625
Target:  5'- aUGUCGCGggCaCGUUCGGCAGcuGCGCg- -3'
miRNA:   3'- -ACAGCGCa-GcGCGAGCCGUU--UGUGac -5'
24293 3' -55.4 NC_005263.2 + 31511 0.68 0.512861
Target:  5'- cUGcUCGCG-CGCGagccCGGCGAACGCg- -3'
miRNA:   3'- -AC-AGCGCaGCGCga--GCCGUUUGUGac -5'
24293 3' -55.4 NC_005263.2 + 20667 0.69 0.471272
Target:  5'- cGUCGCGgccgucgaaagCGUGUUCGGC-GGCGCg- -3'
miRNA:   3'- aCAGCGCa----------GCGCGAGCCGuUUGUGac -5'
24293 3' -55.4 NC_005263.2 + 41387 0.71 0.370315
Target:  5'- gUGUaCGUGUgGCGCUCGagcaugcgcccgaccGCAAGCACUu -3'
miRNA:   3'- -ACA-GCGCAgCGCGAGC---------------CGUUUGUGAc -5'
24293 3' -55.4 NC_005263.2 + 43234 0.75 0.226851
Target:  5'- cUGUUGCGauuggcugaCGCGCUCGGCGuAACGCUc -3'
miRNA:   3'- -ACAGCGCa--------GCGCGAGCCGU-UUGUGAc -5'
24293 3' -55.4 NC_005263.2 + 38934 0.69 0.481514
Target:  5'- cGUCGCuUCGCGCugaUCGGCAcggccaacaAGCAUg- -3'
miRNA:   3'- aCAGCGcAGCGCG---AGCCGU---------UUGUGac -5'
24293 3' -55.4 NC_005263.2 + 29314 0.74 0.239151
Target:  5'- aUG-CGCaUCGCGCgCGGCGAGCACg- -3'
miRNA:   3'- -ACaGCGcAGCGCGaGCCGUUUGUGac -5'
24293 3' -55.4 NC_005263.2 + 33436 0.71 0.358128
Target:  5'- cG-CGCGUaGCGgUCGGCcacGAGCGCUGg -3'
miRNA:   3'- aCaGCGCAgCGCgAGCCG---UUUGUGAC- -5'
24293 3' -55.4 NC_005263.2 + 44667 0.69 0.490824
Target:  5'- cGUCGCG-CGCGCcgaagaagUCGGCGGccauccuGCGCg- -3'
miRNA:   3'- aCAGCGCaGCGCG--------AGCCGUU-------UGUGac -5'
24293 3' -55.4 NC_005263.2 + 26968 0.68 0.555881
Target:  5'- gGUCGUGauaGCGCUUGGCu-GCAgUGc -3'
miRNA:   3'- aCAGCGCag-CGCGAGCCGuuUGUgAC- -5'
24293 3' -55.4 NC_005263.2 + 47412 0.73 0.271644
Target:  5'- cGUCGaguucauCGgCGCGCUCGGCAAggcGCGCUa -3'
miRNA:   3'- aCAGC-------GCaGCGCGAGCCGUU---UGUGAc -5'
24293 3' -55.4 NC_005263.2 + 20799 0.71 0.358128
Target:  5'- cGUCGgGUCGCGCcgugguauuUCuGCAGGCGCg- -3'
miRNA:   3'- aCAGCgCAGCGCG---------AGcCGUUUGUGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.