miRNA display CGI


Results 1 - 20 of 89 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24293 3' -55.4 NC_005263.2 + 678 0.67 0.61098
Target:  5'- gGUaGUGccCGUGCUCGGUGAGCGCg- -3'
miRNA:   3'- aCAgCGCa-GCGCGAGCCGUUUGUGac -5'
24293 3' -55.4 NC_005263.2 + 1168 0.66 0.644334
Target:  5'- cGUCGCGgcgacuugugccUCGUGCUgcgCGGCA-GCGCg- -3'
miRNA:   3'- aCAGCGC------------AGCGCGA---GCCGUuUGUGac -5'
24293 3' -55.4 NC_005263.2 + 1294 0.66 0.677585
Target:  5'- cGUUGCGUuaCGCGaUCGGCGugaauuGCAgCUGa -3'
miRNA:   3'- aCAGCGCA--GCGCgAGCCGUu-----UGU-GAC- -5'
24293 3' -55.4 NC_005263.2 + 1562 0.66 0.666531
Target:  5'- -uUCGUGUUGCGCaCGGUAuagacGGCACg- -3'
miRNA:   3'- acAGCGCAGCGCGaGCCGU-----UUGUGac -5'
24293 3' -55.4 NC_005263.2 + 2455 0.68 0.523498
Target:  5'- --aCGCGgccaGCUCGGCAAGCACc- -3'
miRNA:   3'- acaGCGCagcgCGAGCCGUUUGUGac -5'
24293 3' -55.4 NC_005263.2 + 2694 0.68 0.56681
Target:  5'- -aUCGCG-CGgcCGCUCGGCAggUGCa- -3'
miRNA:   3'- acAGCGCaGC--GCGAGCCGUuuGUGac -5'
24293 3' -55.4 NC_005263.2 + 3190 0.67 0.577792
Target:  5'- cUGcCGC--UGCGCgUCGGCGAGCGCg- -3'
miRNA:   3'- -ACaGCGcaGCGCG-AGCCGUUUGUGac -5'
24293 3' -55.4 NC_005263.2 + 3648 0.69 0.481514
Target:  5'- aGUCGaGcUGCGCuUCGGCGAACGCc- -3'
miRNA:   3'- aCAGCgCaGCGCG-AGCCGUUUGUGac -5'
24293 3' -55.4 NC_005263.2 + 3770 0.67 0.577792
Target:  5'- aUGUCGaCGUCGCGUUCuGGUcgGC-CUu -3'
miRNA:   3'- -ACAGC-GCAGCGCGAG-CCGuuUGuGAc -5'
24293 3' -55.4 NC_005263.2 + 3904 0.71 0.384587
Target:  5'- gUGUCGUGguaGCGCcgggCGGCAAugGCg- -3'
miRNA:   3'- -ACAGCGCag-CGCGa---GCCGUUugUGac -5'
24293 3' -55.4 NC_005263.2 + 4360 0.69 0.475356
Target:  5'- gUGUUGUGUCaauGCGCggucagcgcaugcggUCGGCGAAUACUu -3'
miRNA:   3'- -ACAGCGCAG---CGCG---------------AGCCGUUUGUGAc -5'
24293 3' -55.4 NC_005263.2 + 5198 0.71 0.366804
Target:  5'- uUGcUCGCGcacUCGCGUUCcaGGCGAGCGCg- -3'
miRNA:   3'- -AC-AGCGC---AGCGCGAG--CCGUUUGUGac -5'
24293 3' -55.4 NC_005263.2 + 6568 0.66 0.644334
Target:  5'- cGgCGCGccgCGCGUUUGcGCAGGCGCa- -3'
miRNA:   3'- aCaGCGCa--GCGCGAGC-CGUUUGUGac -5'
24293 3' -55.4 NC_005263.2 + 6602 0.73 0.272343
Target:  5'- cGaCGCGaUCGCGUUCGGCGGcGCGCUc -3'
miRNA:   3'- aCaGCGC-AGCGCGAGCCGUU-UGUGAc -5'
24293 3' -55.4 NC_005263.2 + 6635 0.67 0.598779
Target:  5'- gGUCGagcaGUCGCGCgUCGGUcgcuucacgugcgGGGCGCa- -3'
miRNA:   3'- aCAGCg---CAGCGCG-AGCCG-------------UUUGUGac -5'
24293 3' -55.4 NC_005263.2 + 8532 0.67 0.599886
Target:  5'- -uUCGuCGUCG-GCUCGGCGGugAUg- -3'
miRNA:   3'- acAGC-GCAGCgCGAGCCGUUugUGac -5'
24293 3' -55.4 NC_005263.2 + 8720 0.66 0.677585
Target:  5'- gGcCGCGuccaUCGCGUacUCGGCGAGCGg-- -3'
miRNA:   3'- aCaGCGC----AGCGCG--AGCCGUUUGUgac -5'
24293 3' -55.4 NC_005263.2 + 8851 0.67 0.622092
Target:  5'- -aUCGCG-CGCaGCUCGGCcGACGg-- -3'
miRNA:   3'- acAGCGCaGCG-CGAGCCGuUUGUgac -5'
24293 3' -55.4 NC_005263.2 + 9024 0.67 0.588821
Target:  5'- -uUCGUGcCGCGCgaCGGCGAGCcgGCUa -3'
miRNA:   3'- acAGCGCaGCGCGa-GCCGUUUG--UGAc -5'
24293 3' -55.4 NC_005263.2 + 9043 0.7 0.441232
Target:  5'- aG-CGCGcuuUCGC-CUCGGCGAACAgCUGu -3'
miRNA:   3'- aCaGCGC---AGCGcGAGCCGUUUGU-GAC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.