Results 21 - 40 of 89 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
24296 | 3' | -55.4 | NC_005263.2 | + | 23796 | 0.7 | 0.395902 |
Target: 5'- cGAcCGCCgaugCGACGCGCGCGa-GCCa- -3' miRNA: 3'- -CUuGUGGa---GUUGCGCGCGCaaCGGca -5' |
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24296 | 3' | -55.4 | NC_005263.2 | + | 38542 | 0.7 | 0.399606 |
Target: 5'- cAGCGCCuggacacguucuuugUCGACcuguGCGaCGCGUUGCCGUc -3' miRNA: 3'- cUUGUGG---------------AGUUG----CGC-GCGCAACGGCA- -5' |
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24296 | 3' | -55.4 | NC_005263.2 | + | 19401 | 0.7 | 0.411795 |
Target: 5'- -cGCGCaguacggCAACGCGCGCGUugagguguucggcgUGCCGc -3' miRNA: 3'- cuUGUGga-----GUUGCGCGCGCA--------------ACGGCa -5' |
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24296 | 3' | -55.4 | NC_005263.2 | + | 16475 | 0.7 | 0.424212 |
Target: 5'- cGAACACCgagaCGGCGCuGCGCcgcgcgGCCGUc -3' miRNA: 3'- -CUUGUGGa---GUUGCG-CGCGcaa---CGGCA- -5' |
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24296 | 3' | -55.4 | NC_005263.2 | + | 35623 | 0.7 | 0.433914 |
Target: 5'- aGGAUGCCgCAAUGCGCGCc--GCCGg -3' miRNA: 3'- -CUUGUGGaGUUGCGCGCGcaaCGGCa -5' |
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24296 | 3' | -55.4 | NC_005263.2 | + | 33831 | 0.7 | 0.443744 |
Target: 5'- -cGCuuauCC-CAAUGCGCGCGUUgcGCCGg -3' miRNA: 3'- cuUGu---GGaGUUGCGCGCGCAA--CGGCa -5' |
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24296 | 3' | -55.4 | NC_005263.2 | + | 1614 | 0.69 | 0.453698 |
Target: 5'- cGGACACUUCGACGCcgaGUGCGUcgGUCa- -3' miRNA: 3'- -CUUGUGGAGUUGCG---CGCGCAa-CGGca -5' |
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24296 | 3' | -55.4 | NC_005263.2 | + | 44388 | 0.69 | 0.463772 |
Target: 5'- uGGACAUgcguaUCAACGCGCGCGgcaUUGgCGUc -3' miRNA: 3'- -CUUGUGg----AGUUGCGCGCGC---AACgGCA- -5' |
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24296 | 3' | -55.4 | NC_005263.2 | + | 27118 | 0.69 | 0.463772 |
Target: 5'- cGGCACgUCGACGCGCaggcGCGcaGCCGc -3' miRNA: 3'- cUUGUGgAGUUGCGCG----CGCaaCGGCa -5' |
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24296 | 3' | -55.4 | NC_005263.2 | + | 30322 | 0.69 | 0.472937 |
Target: 5'- -uGCGCCUCGaaaauuuGCGagaaGCGCG-UGCCGa -3' miRNA: 3'- cuUGUGGAGU-------UGCg---CGCGCaACGGCa -5' |
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24296 | 3' | -55.4 | NC_005263.2 | + | 6173 | 0.69 | 0.472937 |
Target: 5'- -uGCGCCUUgAGCgGCGCGCGUUucgcauucaggaaGCCGg -3' miRNA: 3'- cuUGUGGAG-UUG-CGCGCGCAA-------------CGGCa -5' |
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24296 | 3' | -55.4 | NC_005263.2 | + | 23016 | 0.69 | 0.473961 |
Target: 5'- aGGACACC-CGGCGUGCcaGCGccacccgaaUUGCCGg -3' miRNA: 3'- -CUUGUGGaGUUGCGCG--CGC---------AACGGCa -5' |
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24296 | 3' | -55.4 | NC_005263.2 | + | 29036 | 0.69 | 0.484262 |
Target: 5'- aGACGCaC-CAGCGCGCGCag-GCCGc -3' miRNA: 3'- cUUGUG-GaGUUGCGCGCGcaaCGGCa -5' |
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24296 | 3' | -55.4 | NC_005263.2 | + | 45458 | 0.69 | 0.484262 |
Target: 5'- -uGCACCUCGAgccCG-GCGCGaacgUGCCGa -3' miRNA: 3'- cuUGUGGAGUU---GCgCGCGCa---ACGGCa -5' |
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24296 | 3' | -55.4 | NC_005263.2 | + | 43852 | 0.68 | 0.505176 |
Target: 5'- cGGGCGCaaCAACGUGCGCGgcauccugacGCCGa -3' miRNA: 3'- -CUUGUGgaGUUGCGCGCGCaa--------CGGCa -5' |
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24296 | 3' | -55.4 | NC_005263.2 | + | 38018 | 0.68 | 0.526469 |
Target: 5'- cGAACAuUCUCGACGCGCugcccGCGUcGCuCGg -3' miRNA: 3'- -CUUGU-GGAGUUGCGCG-----CGCAaCG-GCa -5' |
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24296 | 3' | -55.4 | NC_005263.2 | + | 4848 | 0.68 | 0.526469 |
Target: 5'- ---uGCC-CGuACGCGCGCGccgUGCCGa -3' miRNA: 3'- cuugUGGaGU-UGCGCGCGCa--ACGGCa -5' |
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24296 | 3' | -55.4 | NC_005263.2 | + | 24686 | 0.68 | 0.526469 |
Target: 5'- gGGGCGCCgguaacggCGGCGCGC-CGaacgUGCCGg -3' miRNA: 3'- -CUUGUGGa-------GUUGCGCGcGCa---ACGGCa -5' |
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24296 | 3' | -55.4 | NC_005263.2 | + | 5251 | 0.68 | 0.526469 |
Target: 5'- aGGCGCCgUCAucaGCGgGCGgUGCCGg -3' miRNA: 3'- cUUGUGG-AGUug-CGCgCGCaACGGCa -5' |
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24296 | 3' | -55.4 | NC_005263.2 | + | 25716 | 0.68 | 0.537242 |
Target: 5'- uGGGCGCCUCuuuccuGGCGCuGCGCGccgUGCaCGa -3' miRNA: 3'- -CUUGUGGAG------UUGCG-CGCGCa--ACG-GCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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