miRNA display CGI


Results 21 - 40 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24296 3' -55.4 NC_005263.2 + 23796 0.7 0.395902
Target:  5'- cGAcCGCCgaugCGACGCGCGCGa-GCCa- -3'
miRNA:   3'- -CUuGUGGa---GUUGCGCGCGCaaCGGca -5'
24296 3' -55.4 NC_005263.2 + 38542 0.7 0.399606
Target:  5'- cAGCGCCuggacacguucuuugUCGACcuguGCGaCGCGUUGCCGUc -3'
miRNA:   3'- cUUGUGG---------------AGUUG----CGC-GCGCAACGGCA- -5'
24296 3' -55.4 NC_005263.2 + 19401 0.7 0.411795
Target:  5'- -cGCGCaguacggCAACGCGCGCGUugagguguucggcgUGCCGc -3'
miRNA:   3'- cuUGUGga-----GUUGCGCGCGCA--------------ACGGCa -5'
24296 3' -55.4 NC_005263.2 + 16475 0.7 0.424212
Target:  5'- cGAACACCgagaCGGCGCuGCGCcgcgcgGCCGUc -3'
miRNA:   3'- -CUUGUGGa---GUUGCG-CGCGcaa---CGGCA- -5'
24296 3' -55.4 NC_005263.2 + 35623 0.7 0.433914
Target:  5'- aGGAUGCCgCAAUGCGCGCc--GCCGg -3'
miRNA:   3'- -CUUGUGGaGUUGCGCGCGcaaCGGCa -5'
24296 3' -55.4 NC_005263.2 + 33831 0.7 0.443744
Target:  5'- -cGCuuauCC-CAAUGCGCGCGUUgcGCCGg -3'
miRNA:   3'- cuUGu---GGaGUUGCGCGCGCAA--CGGCa -5'
24296 3' -55.4 NC_005263.2 + 1614 0.69 0.453698
Target:  5'- cGGACACUUCGACGCcgaGUGCGUcgGUCa- -3'
miRNA:   3'- -CUUGUGGAGUUGCG---CGCGCAa-CGGca -5'
24296 3' -55.4 NC_005263.2 + 44388 0.69 0.463772
Target:  5'- uGGACAUgcguaUCAACGCGCGCGgcaUUGgCGUc -3'
miRNA:   3'- -CUUGUGg----AGUUGCGCGCGC---AACgGCA- -5'
24296 3' -55.4 NC_005263.2 + 27118 0.69 0.463772
Target:  5'- cGGCACgUCGACGCGCaggcGCGcaGCCGc -3'
miRNA:   3'- cUUGUGgAGUUGCGCG----CGCaaCGGCa -5'
24296 3' -55.4 NC_005263.2 + 30322 0.69 0.472937
Target:  5'- -uGCGCCUCGaaaauuuGCGagaaGCGCG-UGCCGa -3'
miRNA:   3'- cuUGUGGAGU-------UGCg---CGCGCaACGGCa -5'
24296 3' -55.4 NC_005263.2 + 6173 0.69 0.472937
Target:  5'- -uGCGCCUUgAGCgGCGCGCGUUucgcauucaggaaGCCGg -3'
miRNA:   3'- cuUGUGGAG-UUG-CGCGCGCAA-------------CGGCa -5'
24296 3' -55.4 NC_005263.2 + 23016 0.69 0.473961
Target:  5'- aGGACACC-CGGCGUGCcaGCGccacccgaaUUGCCGg -3'
miRNA:   3'- -CUUGUGGaGUUGCGCG--CGC---------AACGGCa -5'
24296 3' -55.4 NC_005263.2 + 29036 0.69 0.484262
Target:  5'- aGACGCaC-CAGCGCGCGCag-GCCGc -3'
miRNA:   3'- cUUGUG-GaGUUGCGCGCGcaaCGGCa -5'
24296 3' -55.4 NC_005263.2 + 45458 0.69 0.484262
Target:  5'- -uGCACCUCGAgccCG-GCGCGaacgUGCCGa -3'
miRNA:   3'- cuUGUGGAGUU---GCgCGCGCa---ACGGCa -5'
24296 3' -55.4 NC_005263.2 + 43852 0.68 0.505176
Target:  5'- cGGGCGCaaCAACGUGCGCGgcauccugacGCCGa -3'
miRNA:   3'- -CUUGUGgaGUUGCGCGCGCaa--------CGGCa -5'
24296 3' -55.4 NC_005263.2 + 38018 0.68 0.526469
Target:  5'- cGAACAuUCUCGACGCGCugcccGCGUcGCuCGg -3'
miRNA:   3'- -CUUGU-GGAGUUGCGCG-----CGCAaCG-GCa -5'
24296 3' -55.4 NC_005263.2 + 4848 0.68 0.526469
Target:  5'- ---uGCC-CGuACGCGCGCGccgUGCCGa -3'
miRNA:   3'- cuugUGGaGU-UGCGCGCGCa--ACGGCa -5'
24296 3' -55.4 NC_005263.2 + 24686 0.68 0.526469
Target:  5'- gGGGCGCCgguaacggCGGCGCGC-CGaacgUGCCGg -3'
miRNA:   3'- -CUUGUGGa-------GUUGCGCGcGCa---ACGGCa -5'
24296 3' -55.4 NC_005263.2 + 5251 0.68 0.526469
Target:  5'- aGGCGCCgUCAucaGCGgGCGgUGCCGg -3'
miRNA:   3'- cUUGUGG-AGUug-CGCgCGCaACGGCa -5'
24296 3' -55.4 NC_005263.2 + 25716 0.68 0.537242
Target:  5'- uGGGCGCCUCuuuccuGGCGCuGCGCGccgUGCaCGa -3'
miRNA:   3'- -CUUGUGGAG------UUGCG-CGCGCa--ACG-GCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.