miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24296 5' -56.2 NC_005263.2 + 28740 1.09 0.000641
Target:  5'- cUGACGGCAAUGCGCAUCCGGUGCUCGa -3'
miRNA:   3'- -ACUGCCGUUACGCGUAGGCCACGAGC- -5'
24296 5' -56.2 NC_005263.2 + 16584 0.76 0.151154
Target:  5'- cGGCGGCGAcGCGUucgCCGG-GCUCGc -3'
miRNA:   3'- aCUGCCGUUaCGCGua-GGCCaCGAGC- -5'
24296 5' -56.2 NC_005263.2 + 37813 0.76 0.15975
Target:  5'- cGACGGgc--GCGCAUCCGGcGCUCa -3'
miRNA:   3'- aCUGCCguuaCGCGUAGGCCaCGAGc -5'
24296 5' -56.2 NC_005263.2 + 36165 0.76 0.164211
Target:  5'- cGACGGCc-UGCGCGaCCGGUGCg-- -3'
miRNA:   3'- aCUGCCGuuACGCGUaGGCCACGagc -5'
24296 5' -56.2 NC_005263.2 + 15584 0.75 0.193394
Target:  5'- aUGACGGUA--GCGCggCCGGUGCaCGa -3'
miRNA:   3'- -ACUGCCGUuaCGCGuaGGCCACGaGC- -5'
24296 5' -56.2 NC_005263.2 + 21067 0.73 0.252096
Target:  5'- gGGCGGCc--GCGCAUCC--UGCUCGa -3'
miRNA:   3'- aCUGCCGuuaCGCGUAGGccACGAGC- -5'
24296 5' -56.2 NC_005263.2 + 31621 0.73 0.265468
Target:  5'- cGACGGCcgcGcgGCGCAgcgccgUCuCGGUGUUCGu -3'
miRNA:   3'- aCUGCCG---UuaCGCGU------AG-GCCACGAGC- -5'
24296 5' -56.2 NC_005263.2 + 37336 0.72 0.279408
Target:  5'- cGAgGGCGAUGCGUuccagucgGUCgCGGccgUGCUCGa -3'
miRNA:   3'- aCUgCCGUUACGCG--------UAG-GCC---ACGAGC- -5'
24296 5' -56.2 NC_005263.2 + 19406 0.71 0.324706
Target:  5'- aGuACGGCAAcgcGCGCGUUgaGGUGUUCGg -3'
miRNA:   3'- aC-UGCCGUUa--CGCGUAGg-CCACGAGC- -5'
24296 5' -56.2 NC_005263.2 + 24837 0.71 0.332766
Target:  5'- cGGCGGCAAcgGCGgugCCGGUGCg-- -3'
miRNA:   3'- aCUGCCGUUa-CGCguaGGCCACGagc -5'
24296 5' -56.2 NC_005263.2 + 1251 0.71 0.332766
Target:  5'- --cCGGCcagGAUGCGCgAUCCGGguaagGCUCa -3'
miRNA:   3'- acuGCCG---UUACGCG-UAGGCCa----CGAGc -5'
24296 5' -56.2 NC_005263.2 + 23937 0.7 0.357821
Target:  5'- uUGGCGGCu-UGCGCGUCgugagcgugaCGGUGC-Ca -3'
miRNA:   3'- -ACUGCCGuuACGCGUAG----------GCCACGaGc -5'
24296 5' -56.2 NC_005263.2 + 30926 0.7 0.366461
Target:  5'- cGACGGCGuacgcgcgagcUGCGCAUUCGGcuuCUCGg -3'
miRNA:   3'- aCUGCCGUu----------ACGCGUAGGCCac-GAGC- -5'
24296 5' -56.2 NC_005263.2 + 37214 0.7 0.390498
Target:  5'- -cGCGGCGAUacgccgcucacgacGCGCG-CCGGUGC-CGa -3'
miRNA:   3'- acUGCCGUUA--------------CGCGUaGGCCACGaGC- -5'
24296 5' -56.2 NC_005263.2 + 21104 0.7 0.393232
Target:  5'- gGGCGGCGAcgagcccgGCGCAgCgGGUGCUg- -3'
miRNA:   3'- aCUGCCGUUa-------CGCGUaGgCCACGAgc -5'
24296 5' -56.2 NC_005263.2 + 47779 0.7 0.393232
Target:  5'- gGGCGGUAcgGC-CAuUCCGGUGCa-- -3'
miRNA:   3'- aCUGCCGUuaCGcGU-AGGCCACGagc -5'
24296 5' -56.2 NC_005263.2 + 27917 0.7 0.402434
Target:  5'- cGACGGCg--GCGCGUcgcCCGGcgcGCUCu -3'
miRNA:   3'- aCUGCCGuuaCGCGUA---GGCCa--CGAGc -5'
24296 5' -56.2 NC_005263.2 + 26536 0.69 0.411771
Target:  5'- cGGCGGCGAgcacgcgGCGCuggaacggCCaGUGCUCu -3'
miRNA:   3'- aCUGCCGUUa------CGCGua------GGcCACGAGc -5'
24296 5' -56.2 NC_005263.2 + 17756 0.69 0.411771
Target:  5'- cGGCGGCA--GCGCggCCGc-GCUCGg -3'
miRNA:   3'- aCUGCCGUuaCGCGuaGGCcaCGAGC- -5'
24296 5' -56.2 NC_005263.2 + 18766 0.69 0.440567
Target:  5'- aGGCGGCGcgGUGCucgcgCUGGUuaucguGCUCGc -3'
miRNA:   3'- aCUGCCGUuaCGCGua---GGCCA------CGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.