miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24296 5' -56.2 NC_005263.2 + 28740 1.09 0.000641
Target:  5'- cUGACGGCAAUGCGCAUCCGGUGCUCGa -3'
miRNA:   3'- -ACUGCCGUUACGCGUAGGCCACGAGC- -5'
24296 5' -56.2 NC_005263.2 + 13653 0.67 0.569972
Target:  5'- aUGACGGUcGUGCGCA-CCGcGUcgcgaaugcgcaggcGUUCGa -3'
miRNA:   3'- -ACUGCCGuUACGCGUaGGC-CA---------------CGAGC- -5'
24296 5' -56.2 NC_005263.2 + 615 0.66 0.62067
Target:  5'- ---aGGCAGUGCccgacaGCGggCCGGUGCUg- -3'
miRNA:   3'- acugCCGUUACG------CGUa-GGCCACGAgc -5'
24296 5' -56.2 NC_005263.2 + 42954 0.66 0.631751
Target:  5'- -cACGGCcc-GUGCGUCCGG-GCUg- -3'
miRNA:   3'- acUGCCGuuaCGCGUAGGCCaCGAgc -5'
24296 5' -56.2 NC_005263.2 + 31621 0.73 0.265468
Target:  5'- cGACGGCcgcGcgGCGCAgcgccgUCuCGGUGUUCGu -3'
miRNA:   3'- aCUGCCG---UuaCGCGU------AG-GCCACGAGC- -5'
24296 5' -56.2 NC_005263.2 + 37336 0.72 0.279408
Target:  5'- cGAgGGCGAUGCGUuccagucgGUCgCGGccgUGCUCGa -3'
miRNA:   3'- aCUgCCGUUACGCG--------UAG-GCC---ACGAGC- -5'
24296 5' -56.2 NC_005263.2 + 37214 0.7 0.390498
Target:  5'- -cGCGGCGAUacgccgcucacgacGCGCG-CCGGUGC-CGa -3'
miRNA:   3'- acUGCCGUUA--------------CGCGUaGGCCACGaGC- -5'
24296 5' -56.2 NC_005263.2 + 21104 0.7 0.393232
Target:  5'- gGGCGGCGAcgagcccgGCGCAgCgGGUGCUg- -3'
miRNA:   3'- aCUGCCGUUa-------CGCGUaGgCCACGAgc -5'
24296 5' -56.2 NC_005263.2 + 10186 0.69 0.450418
Target:  5'- cGGCGGCGcgccUGCGC--CCGGcUGUUCGu -3'
miRNA:   3'- aCUGCCGUu---ACGCGuaGGCC-ACGAGC- -5'
24296 5' -56.2 NC_005263.2 + 5873 0.67 0.565602
Target:  5'- -cGCGGuCGAUGCGCAUCCcaUGCa-- -3'
miRNA:   3'- acUGCC-GUUACGCGUAGGccACGagc -5'
24296 5' -56.2 NC_005263.2 + 9191 0.68 0.480672
Target:  5'- cGAgcuCGGCGcgGCGC--CCGGcuUGCUCGu -3'
miRNA:   3'- aCU---GCCGUuaCGCGuaGGCC--ACGAGC- -5'
24296 5' -56.2 NC_005263.2 + 45171 0.69 0.440567
Target:  5'- cGGCGGCGAUgGCGCAUUCGcGaGCauggCGg -3'
miRNA:   3'- aCUGCCGUUA-CGCGUAGGC-CaCGa---GC- -5'
24296 5' -56.2 NC_005263.2 + 36165 0.76 0.164211
Target:  5'- cGACGGCc-UGCGCGaCCGGUGCg-- -3'
miRNA:   3'- aCUGCCGuuACGCGUaGGCCACGagc -5'
24296 5' -56.2 NC_005263.2 + 26095 0.68 0.489941
Target:  5'- -uGCGGCcgaGCGCGUCCuGGUacgcgccGCUCGa -3'
miRNA:   3'- acUGCCGuuaCGCGUAGG-CCA-------CGAGC- -5'
24296 5' -56.2 NC_005263.2 + 15584 0.75 0.193394
Target:  5'- aUGACGGUA--GCGCggCCGGUGCaCGa -3'
miRNA:   3'- -ACUGCCGUuaCGCGuaGGCCACGaGC- -5'
24296 5' -56.2 NC_005263.2 + 26536 0.69 0.411771
Target:  5'- cGGCGGCGAgcacgcgGCGCuggaacggCCaGUGCUCu -3'
miRNA:   3'- aCUGCCGUUa------CGCGua------GGcCACGAGc -5'
24296 5' -56.2 NC_005263.2 + 46236 0.67 0.533147
Target:  5'- aGGCuGCAA-GCGCG-CCGGUGgUCu -3'
miRNA:   3'- aCUGcCGUUaCGCGUaGGCCACgAGc -5'
24296 5' -56.2 NC_005263.2 + 23618 0.66 0.609599
Target:  5'- cGGCGGCAccGUGgucgagCCGGaGCUCGu -3'
miRNA:   3'- aCUGCCGUuaCGCgua---GGCCaCGAGC- -5'
24296 5' -56.2 NC_005263.2 + 21067 0.73 0.252096
Target:  5'- gGGCGGCc--GCGCAUCC--UGCUCGa -3'
miRNA:   3'- aCUGCCGuuaCGCGUAGGccACGAGC- -5'
24296 5' -56.2 NC_005263.2 + 23937 0.7 0.357821
Target:  5'- uUGGCGGCu-UGCGCGUCgugagcgugaCGGUGC-Ca -3'
miRNA:   3'- -ACUGCCGuuACGCGUAG----------GCCACGaGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.