miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24296 5' -56.2 NC_005263.2 + 615 0.66 0.62067
Target:  5'- ---aGGCAGUGCccgacaGCGggCCGGUGCUg- -3'
miRNA:   3'- acugCCGUUACG------CGUa-GGCCACGAgc -5'
24296 5' -56.2 NC_005263.2 + 1251 0.71 0.332766
Target:  5'- --cCGGCcagGAUGCGCgAUCCGGguaagGCUCa -3'
miRNA:   3'- acuGCCG---UUACGCG-UAGGCCa----CGAGc -5'
24296 5' -56.2 NC_005263.2 + 5873 0.67 0.565602
Target:  5'- -cGCGGuCGAUGCGCAUCCcaUGCa-- -3'
miRNA:   3'- acUGCC-GUUACGCGUAGGccACGagc -5'
24296 5' -56.2 NC_005263.2 + 8258 0.66 0.642833
Target:  5'- aGcCGGguAUGCGCGUUCGGacgGC-Ca -3'
miRNA:   3'- aCuGCCguUACGCGUAGGCCa--CGaGc -5'
24296 5' -56.2 NC_005263.2 + 8808 0.66 0.609599
Target:  5'- -cGCGcGCGcAUGCGCcugCCGGccGCUCGg -3'
miRNA:   3'- acUGC-CGU-UACGCGua-GGCCa-CGAGC- -5'
24296 5' -56.2 NC_005263.2 + 9191 0.68 0.480672
Target:  5'- cGAgcuCGGCGcgGCGC--CCGGcuUGCUCGu -3'
miRNA:   3'- aCU---GCCGUuaCGCGuaGGCC--ACGAGC- -5'
24296 5' -56.2 NC_005263.2 + 10186 0.69 0.450418
Target:  5'- cGGCGGCGcgccUGCGC--CCGGcUGUUCGu -3'
miRNA:   3'- aCUGCCGUu---ACGCGuaGGCC-ACGAGC- -5'
24296 5' -56.2 NC_005263.2 + 10400 0.66 0.598547
Target:  5'- cGGcCGGCGA-GCGgGUCCGGcGCgCGu -3'
miRNA:   3'- aCU-GCCGUUaCGCgUAGGCCaCGaGC- -5'
24296 5' -56.2 NC_005263.2 + 13653 0.67 0.569972
Target:  5'- aUGACGGUcGUGCGCA-CCGcGUcgcgaaugcgcaggcGUUCGa -3'
miRNA:   3'- -ACUGCCGuUACGCGUaGGC-CA---------------CGAGC- -5'
24296 5' -56.2 NC_005263.2 + 14174 0.66 0.62067
Target:  5'- cGGCGGCcgguGUGCGCGagCUGcGUGCg-- -3'
miRNA:   3'- aCUGCCGu---UACGCGUa-GGC-CACGagc -5'
24296 5' -56.2 NC_005263.2 + 14976 0.68 0.470475
Target:  5'- cUGGCGGCAGcgaucUGCGCGUgaCGuucUGCUCGc -3'
miRNA:   3'- -ACUGCCGUU-----ACGCGUAg-GCc--ACGAGC- -5'
24296 5' -56.2 NC_005263.2 + 15584 0.75 0.193394
Target:  5'- aUGACGGUA--GCGCggCCGGUGCaCGa -3'
miRNA:   3'- -ACUGCCGUuaCGCGuaGGCCACGaGC- -5'
24296 5' -56.2 NC_005263.2 + 16584 0.76 0.151154
Target:  5'- cGGCGGCGAcGCGUucgCCGG-GCUCGc -3'
miRNA:   3'- aCUGCCGUUaCGCGua-GGCCaCGAGC- -5'
24296 5' -56.2 NC_005263.2 + 17050 0.66 0.587525
Target:  5'- gUGGCGGC-GUGaacgGCuUCaugaaGGUGCUCGa -3'
miRNA:   3'- -ACUGCCGuUACg---CGuAGg----CCACGAGC- -5'
24296 5' -56.2 NC_005263.2 + 17143 0.66 0.642833
Target:  5'- --uCGGCGAaGCGgucgaCGUCgCGGUGUUCGg -3'
miRNA:   3'- acuGCCGUUaCGC-----GUAG-GCCACGAGC- -5'
24296 5' -56.2 NC_005263.2 + 17534 0.66 0.608493
Target:  5'- -cACGGCAaacgguGUGCGCGaauccggUCUGGUGCccUCa -3'
miRNA:   3'- acUGCCGU------UACGCGU-------AGGCCACG--AGc -5'
24296 5' -56.2 NC_005263.2 + 17756 0.69 0.411771
Target:  5'- cGGCGGCA--GCGCggCCGc-GCUCGg -3'
miRNA:   3'- aCUGCCGUuaCGCGuaGGCcaCGAGC- -5'
24296 5' -56.2 NC_005263.2 + 17907 0.66 0.62067
Target:  5'- cGGCGcGCAGaucgGCGCGccCCGG-GCUCc -3'
miRNA:   3'- aCUGC-CGUUa---CGCGUa-GGCCaCGAGc -5'
24296 5' -56.2 NC_005263.2 + 18766 0.69 0.440567
Target:  5'- aGGCGGCGcgGUGCucgcgCUGGUuaucguGCUCGc -3'
miRNA:   3'- aCUGCCGUuaCGCGua---GGCCA------CGAGC- -5'
24296 5' -56.2 NC_005263.2 + 18895 0.67 0.576541
Target:  5'- cGACGGCAAauaCGCG-CCGGccUGCgUCGa -3'
miRNA:   3'- aCUGCCGUUac-GCGUaGGCC--ACG-AGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.