miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24310 3' -58.6 NC_005263.2 + 38436 1.12 0.000267
Target:  5'- cGUGACGCCGGCCACGGUCAAGACGGCg -3'
miRNA:   3'- -CACUGCGGCCGGUGCCAGUUCUGCCG- -5'
24310 3' -58.6 NC_005263.2 + 35697 0.78 0.081261
Target:  5'- gGUGAuuggggucUGCCGGCCGgcaaGGUCgAAGACGGCg -3'
miRNA:   3'- -CACU--------GCGGCCGGUg---CCAG-UUCUGCCG- -5'
24310 3' -58.6 NC_005263.2 + 19972 0.77 0.101675
Target:  5'- -cGGCGCUGGCaGCGuG-CAAGACGGCg -3'
miRNA:   3'- caCUGCGGCCGgUGC-CaGUUCUGCCG- -5'
24310 3' -58.6 NC_005263.2 + 14960 0.76 0.113614
Target:  5'- -aGGCGCCGcGCCAUGG-Cu-GGCGGCa -3'
miRNA:   3'- caCUGCGGC-CGGUGCCaGuuCUGCCG- -5'
24310 3' -58.6 NC_005263.2 + 22499 0.75 0.133997
Target:  5'- -cGGCgGCCGGCgGCGGUUc-GGCGGCu -3'
miRNA:   3'- caCUG-CGGCCGgUGCCAGuuCUGCCG- -5'
24310 3' -58.6 NC_005263.2 + 35896 0.74 0.170921
Target:  5'- uUGAUGUCGG-UGCGGUCGAGACacaGGCg -3'
miRNA:   3'- cACUGCGGCCgGUGCCAGUUCUG---CCG- -5'
24310 3' -58.6 NC_005263.2 + 34699 0.74 0.170921
Target:  5'- -aGGCGCCGGCCGUGGUCugcaaaccauuGGGCguGGCg -3'
miRNA:   3'- caCUGCGGCCGGUGCCAGu----------UCUG--CCG- -5'
24310 3' -58.6 NC_005263.2 + 24288 0.74 0.175544
Target:  5'- -cGGCGCuuucgCGGCgACGaUCAAGACGGCc -3'
miRNA:   3'- caCUGCG-----GCCGgUGCcAGUUCUGCCG- -5'
24310 3' -58.6 NC_005263.2 + 45811 0.73 0.180279
Target:  5'- -gGGCguGCCGGCCACGGcgCAcgaccugccGACGGCg -3'
miRNA:   3'- caCUG--CGGCCGGUGCCa-GUu--------CUGCCG- -5'
24310 3' -58.6 NC_005263.2 + 13016 0.73 0.180279
Target:  5'- cGUGAUGCCGaGUagcuugaucaGCGGgauaugCGAGACGGCg -3'
miRNA:   3'- -CACUGCGGC-CGg---------UGCCa-----GUUCUGCCG- -5'
24310 3' -58.6 NC_005263.2 + 27703 0.72 0.213326
Target:  5'- -cGGCGCCGGCgGCcgcauaggcuugcucGGUCGAGGCaaucacgccGGCa -3'
miRNA:   3'- caCUGCGGCCGgUG---------------CCAGUUCUG---------CCG- -5'
24310 3' -58.6 NC_005263.2 + 27653 0.72 0.228176
Target:  5'- cGUGACGaacgucUCGGCgGCGG-CAAGcACGGCc -3'
miRNA:   3'- -CACUGC------GGCCGgUGCCaGUUC-UGCCG- -5'
24310 3' -58.6 NC_005263.2 + 28418 0.72 0.232321
Target:  5'- -aGGCGCCGGCacgcgcgugaacguCGCGGgCAGcGCGGCg -3'
miRNA:   3'- caCUGCGGCCG--------------GUGCCaGUUcUGCCG- -5'
24310 3' -58.6 NC_005263.2 + 25892 0.72 0.234117
Target:  5'- -cGACGCCGGCgACGGcCGcGACGu- -3'
miRNA:   3'- caCUGCGGCCGgUGCCaGUuCUGCcg -5'
24310 3' -58.6 NC_005263.2 + 27467 0.71 0.246388
Target:  5'- -cGGCGCggccacugCGGCCACGGccuugacuucguUCucGACGGCg -3'
miRNA:   3'- caCUGCG--------GCCGGUGCC------------AGuuCUGCCG- -5'
24310 3' -58.6 NC_005263.2 + 43061 0.71 0.248906
Target:  5'- -cGACGUCGGCCAauaguCGGccgccgggccggcugUCGAGcGCGGCg -3'
miRNA:   3'- caCUGCGGCCGGU-----GCC---------------AGUUC-UGCCG- -5'
24310 3' -58.6 NC_005263.2 + 17121 0.71 0.252721
Target:  5'- cUGGCGuCCGGCCugGGguuccuCGGCg -3'
miRNA:   3'- cACUGC-GGCCGGugCCaguucuGCCG- -5'
24310 3' -58.6 NC_005263.2 + 28949 0.71 0.252721
Target:  5'- --cGCGCCGGCggaugCACGGUCAcgacGACGcGCa -3'
miRNA:   3'- cacUGCGGCCG-----GUGCCAGUu---CUGC-CG- -5'
24310 3' -58.6 NC_005263.2 + 35754 0.71 0.265789
Target:  5'- -aGGCGCgGG-CGCGGUUAcuGCGGCu -3'
miRNA:   3'- caCUGCGgCCgGUGCCAGUucUGCCG- -5'
24310 3' -58.6 NC_005263.2 + 26530 0.71 0.265789
Target:  5'- -cGACGCCGGCgGCGaG-CAc-GCGGCg -3'
miRNA:   3'- caCUGCGGCCGgUGC-CaGUucUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.