miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24310 3' -58.6 NC_005263.2 + 564 0.67 0.465067
Target:  5'- -gGGCGCgcaGGCCuuGGaaugCGAGAuCGGCa -3'
miRNA:   3'- caCUGCGg--CCGGugCCa---GUUCU-GCCG- -5'
24310 3' -58.6 NC_005263.2 + 962 0.7 0.300841
Target:  5'- -cGACGUa-GCgGCGGUCGccugcgcgucGGACGGCg -3'
miRNA:   3'- caCUGCGgcCGgUGCCAGU----------UCUGCCG- -5'
24310 3' -58.6 NC_005263.2 + 1548 0.7 0.277321
Target:  5'- -cGAUGCCGaGCacguucguguugcgCACGGUauAGACGGCa -3'
miRNA:   3'- caCUGCGGC-CG--------------GUGCCAguUCUGCCG- -5'
24310 3' -58.6 NC_005263.2 + 1623 0.68 0.381328
Target:  5'- -cGACGCCGaguGCguCGGUCAGuuCGGUg -3'
miRNA:   3'- caCUGCGGC---CGguGCCAGUUcuGCCG- -5'
24310 3' -58.6 NC_005263.2 + 2397 0.68 0.408119
Target:  5'- -cGGCGCCGGCgGucgcuUGGUCGccguacAG-CGGCa -3'
miRNA:   3'- caCUGCGGCCGgU-----GCCAGU------UCuGCCG- -5'
24310 3' -58.6 NC_005263.2 + 2687 0.69 0.323534
Target:  5'- aGUGucGCGCCGGCgGCGGcCGacAGAccgaguucguCGGCg -3'
miRNA:   3'- -CAC--UGCGGCCGgUGCCaGU--UCU----------GCCG- -5'
24310 3' -58.6 NC_005263.2 + 3348 0.66 0.505237
Target:  5'- -cGGCGCC-GCgCGCGGUCGAG-CGa- -3'
miRNA:   3'- caCUGCGGcCG-GUGCCAGUUCuGCcg -5'
24310 3' -58.6 NC_005263.2 + 3615 0.67 0.445612
Target:  5'- -gGAUGCC-GCCGuCGGUCAGGuaGGCc -3'
miRNA:   3'- caCUGCGGcCGGU-GCCAGUUCugCCG- -5'
24310 3' -58.6 NC_005263.2 + 3908 0.67 0.426621
Target:  5'- cGUGguaGCGCCGG--GCGG-CAAuGGCGGCa -3'
miRNA:   3'- -CAC---UGCGGCCggUGCCaGUU-CUGCCG- -5'
24310 3' -58.6 NC_005263.2 + 4662 0.66 0.536317
Target:  5'- -gGGCagGCCGGCgCGCGGgucuuucgUCAGGAucgugccguCGGCg -3'
miRNA:   3'- caCUG--CGGCCG-GUGCC--------AGUUCU---------GCCG- -5'
24310 3' -58.6 NC_005263.2 + 5032 0.66 0.525877
Target:  5'- -cGACaGCCGGCCcgGCGGcCGAcuauuggccgacGuCGGCg -3'
miRNA:   3'- caCUG-CGGCCGG--UGCCaGUU------------CuGCCG- -5'
24310 3' -58.6 NC_005263.2 + 5842 0.68 0.390127
Target:  5'- uUGuuGUCGGCCgucguGCGGUCGaagucgagccgcAGGCGGUa -3'
miRNA:   3'- cACugCGGCCGG-----UGCCAGU------------UCUGCCG- -5'
24310 3' -58.6 NC_005263.2 + 6790 0.67 0.444652
Target:  5'- gGUGACGCCGGCgGgCGGcgUCAAuugcacuugcaguGACuGCa -3'
miRNA:   3'- -CACUGCGGCCGgU-GCC--AGUU-------------CUGcCG- -5'
24310 3' -58.6 NC_005263.2 + 7270 0.66 0.525877
Target:  5'- -cGAUGUCGGUCG-GGaCGAGcgGCGGCa -3'
miRNA:   3'- caCUGCGGCCGGUgCCaGUUC--UGCCG- -5'
24310 3' -58.6 NC_005263.2 + 9431 0.66 0.505237
Target:  5'- cGUGcCGCCcgGGCCGa--UCAAGACGGg -3'
miRNA:   3'- -CACuGCGG--CCGGUgccAGUUCUGCCg -5'
24310 3' -58.6 NC_005263.2 + 9551 0.68 0.381328
Target:  5'- -cGACGCgGcGCuCGCGGcuugCcAGGCGGCg -3'
miRNA:   3'- caCUGCGgC-CG-GUGCCa---GuUCUGCCG- -5'
24310 3' -58.6 NC_005263.2 + 9620 0.67 0.445612
Target:  5'- --cGCGUCGcGCCACGGaucgacaaaguUCGAcGCGGCa -3'
miRNA:   3'- cacUGCGGC-CGGUGCC-----------AGUUcUGCCG- -5'
24310 3' -58.6 NC_005263.2 + 10084 0.67 0.474958
Target:  5'- -cGACGCgGGCaGCGcGUCGAGAauGUu -3'
miRNA:   3'- caCUGCGgCCGgUGC-CAGUUCUgcCG- -5'
24310 3' -58.6 NC_005263.2 + 10850 0.67 0.474958
Target:  5'- uUGGUGCgGGCUACGG-CGucGCGGCg -3'
miRNA:   3'- cACUGCGgCCGGUGCCaGUucUGCCG- -5'
24310 3' -58.6 NC_005263.2 + 12296 0.66 0.495048
Target:  5'- -cGAC-CCGGCC-UGGaCAGGuuuCGGCa -3'
miRNA:   3'- caCUGcGGCCGGuGCCaGUUCu--GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.