miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24310 3' -58.6 NC_005263.2 + 38436 1.12 0.000267
Target:  5'- cGUGACGCCGGCCACGGUCAAGACGGCg -3'
miRNA:   3'- -CACUGCGGCCGGUGCCAGUUCUGCCG- -5'
24310 3' -58.6 NC_005263.2 + 29036 0.69 0.328222
Target:  5'- -aGACGCaccagcgcgcgcaGGCCGCGcGgcgcguccUCGGGGCGGCg -3'
miRNA:   3'- caCUGCGg------------CCGGUGC-C--------AGUUCUGCCG- -5'
24310 3' -58.6 NC_005263.2 + 19856 0.69 0.347477
Target:  5'- -cGAUGCgaacaaGGUCACGG-CGAGcGCGGCg -3'
miRNA:   3'- caCUGCGg-----CCGGUGCCaGUUC-UGCCG- -5'
24310 3' -58.6 NC_005263.2 + 26951 0.66 0.536317
Target:  5'- aUGACGUCGcuGCCGuCGGUCGuGAUaGCg -3'
miRNA:   3'- cACUGCGGC--CGGU-GCCAGUuCUGcCG- -5'
24310 3' -58.6 NC_005263.2 + 35896 0.74 0.170921
Target:  5'- uUGAUGUCGG-UGCGGUCGAGACacaGGCg -3'
miRNA:   3'- cACUGCGGCCgGUGCCAGUUCUG---CCG- -5'
24310 3' -58.6 NC_005263.2 + 13016 0.73 0.180279
Target:  5'- cGUGAUGCCGaGUagcuugaucaGCGGgauaugCGAGACGGCg -3'
miRNA:   3'- -CACUGCGGC-CGg---------UGCCa-----GUUCUGCCG- -5'
24310 3' -58.6 NC_005263.2 + 26530 0.71 0.265789
Target:  5'- -cGACGCCGGCgGCGaG-CAc-GCGGCg -3'
miRNA:   3'- caCUGCGGCCGgUGC-CaGUucUGCCG- -5'
24310 3' -58.6 NC_005263.2 + 35754 0.71 0.265789
Target:  5'- -aGGCGCgGG-CGCGGUUAcuGCGGCu -3'
miRNA:   3'- caCUGCGgCCgGUGCCAGUucUGCCG- -5'
24310 3' -58.6 NC_005263.2 + 22407 0.7 0.300841
Target:  5'- -aGGCGCCcagguuGGCgACcGUCAAGACGaGCa -3'
miRNA:   3'- caCUGCGG------CCGgUGcCAGUUCUGC-CG- -5'
24310 3' -58.6 NC_005263.2 + 15425 0.69 0.323534
Target:  5'- gGUGA-GCCGGCCguacagguACGGcgCGAGGCaGCg -3'
miRNA:   3'- -CACUgCGGCCGG--------UGCCa-GUUCUGcCG- -5'
24310 3' -58.6 NC_005263.2 + 17806 0.7 0.308266
Target:  5'- -aGACGCCGGCCGCGcc-----CGGCg -3'
miRNA:   3'- caCUGCGGCCGGUGCcaguucuGCCG- -5'
24310 3' -58.6 NC_005263.2 + 40897 0.7 0.286407
Target:  5'- cUGGuCGCCGGCgAUGGUCGcGGAcuCGGUa -3'
miRNA:   3'- cACU-GCGGCCGgUGCCAGU-UCU--GCCG- -5'
24310 3' -58.6 NC_005263.2 + 19972 0.77 0.101675
Target:  5'- -cGGCGCUGGCaGCGuG-CAAGACGGCg -3'
miRNA:   3'- caCUGCGGCCGgUGC-CaGUUCUGCCG- -5'
24310 3' -58.6 NC_005263.2 + 20421 0.7 0.31583
Target:  5'- -cGGCGCCGGCgCGCacaagAAGGCGGCc -3'
miRNA:   3'- caCUGCGGCCG-GUGccag-UUCUGCCG- -5'
24310 3' -58.6 NC_005263.2 + 22499 0.75 0.133997
Target:  5'- -cGGCgGCCGGCgGCGGUUc-GGCGGCu -3'
miRNA:   3'- caCUG-CGGCCGgUGCCAGuuCUGCCG- -5'
24310 3' -58.6 NC_005263.2 + 39679 0.71 0.265789
Target:  5'- -cGACugcuGCCGGacgcgaacuUCACGGUCGccgAGGCGGCg -3'
miRNA:   3'- caCUG----CGGCC---------GGUGCCAGU---UCUGCCG- -5'
24310 3' -58.6 NC_005263.2 + 2687 0.69 0.323534
Target:  5'- aGUGucGCGCCGGCgGCGGcCGacAGAccgaguucguCGGCg -3'
miRNA:   3'- -CAC--UGCGGCCGgUGCCaGU--UCU----------GCCG- -5'
24310 3' -58.6 NC_005263.2 + 44578 0.69 0.347477
Target:  5'- -cGACGCCGGCCGCG----AGAC-GCu -3'
miRNA:   3'- caCUGCGGCCGGUGCcaguUCUGcCG- -5'
24310 3' -58.6 NC_005263.2 + 34699 0.74 0.170921
Target:  5'- -aGGCGCCGGCCGUGGUCugcaaaccauuGGGCguGGCg -3'
miRNA:   3'- caCUGCGGCCGGUGCCAGu----------UCUG--CCG- -5'
24310 3' -58.6 NC_005263.2 + 25892 0.72 0.234117
Target:  5'- -cGACGCCGGCgACGGcCGcGACGu- -3'
miRNA:   3'- caCUGCGGCCGgUGCCaGUuCUGCcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.