miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24313 5' -54 NC_005263.2 + 33950 0.66 0.7515
Target:  5'- cGGCGACAaCUgcggGCCGgCgAGUGUgcgGCGa -3'
miRNA:   3'- -CUGCUGUaGGa---CGGC-GgUCAUAa--CGC- -5'
24313 5' -54 NC_005263.2 + 24783 0.66 0.740835
Target:  5'- gGGCGGCGUCggcgGCuCGCCGGgcgucgGCGg -3'
miRNA:   3'- -CUGCUGUAGga--CG-GCGGUCauaa--CGC- -5'
24313 5' -54 NC_005263.2 + 21246 0.66 0.730053
Target:  5'- cGACGGCGcggUGCgCGCCAcGUAUUGCc -3'
miRNA:   3'- -CUGCUGUaggACG-GCGGU-CAUAACGc -5'
24313 5' -54 NC_005263.2 + 44688 0.67 0.697142
Target:  5'- cGGCGGcCAUCCUGCgCGCaCAcGUcg-GCGg -3'
miRNA:   3'- -CUGCU-GUAGGACG-GCG-GU-CAuaaCGC- -5'
24313 5' -54 NC_005263.2 + 29514 0.67 0.686023
Target:  5'- uGCGGCGUCCgucgGCgCGCCAGcagugGCc -3'
miRNA:   3'- cUGCUGUAGGa---CG-GCGGUCauaa-CGc -5'
24313 5' -54 NC_005263.2 + 14996 0.67 0.686023
Target:  5'- -gUGACGUUCUGCuCGCCGGcUAUcGCc -3'
miRNA:   3'- cuGCUGUAGGACG-GCGGUC-AUAaCGc -5'
24313 5' -54 NC_005263.2 + 45436 0.67 0.674851
Target:  5'- cGCGACA-CUgcagGCUGCCGGUGUcGCc -3'
miRNA:   3'- cUGCUGUaGGa---CGGCGGUCAUAaCGc -5'
24313 5' -54 NC_005263.2 + 34347 0.67 0.674851
Target:  5'- aGCGACGcgCCUGUCGCCGuGUAaaccgGCa -3'
miRNA:   3'- cUGCUGUa-GGACGGCGGU-CAUaa---CGc -5'
24313 5' -54 NC_005263.2 + 4331 0.67 0.663635
Target:  5'- aACGGCccgauaaguuuAUCgaGCCGUUAGUGUUGUGu -3'
miRNA:   3'- cUGCUG-----------UAGgaCGGCGGUCAUAACGC- -5'
24313 5' -54 NC_005263.2 + 36162 0.67 0.641123
Target:  5'- uGGCGACggCCUGCgCGaCCGGU---GCGa -3'
miRNA:   3'- -CUGCUGuaGGACG-GC-GGUCAuaaCGC- -5'
24313 5' -54 NC_005263.2 + 6444 0.67 0.641123
Target:  5'- -cCGACGaUCUGCCGCCAGagcacgaGCGa -3'
miRNA:   3'- cuGCUGUaGGACGGCGGUCauaa---CGC- -5'
24313 5' -54 NC_005263.2 + 11927 0.68 0.629849
Target:  5'- uGCGAUAUCCggcaGCCGgCCGGUAUcGaCGu -3'
miRNA:   3'- cUGCUGUAGGa---CGGC-GGUCAUAaC-GC- -5'
24313 5' -54 NC_005263.2 + 18925 0.68 0.626467
Target:  5'- uGACGACAUCCcGuucugaaccgacgcCCGCCAcGUGcgGCGu -3'
miRNA:   3'- -CUGCUGUAGGaC--------------GGCGGU-CAUaaCGC- -5'
24313 5' -54 NC_005263.2 + 7349 0.68 0.618577
Target:  5'- aGCGACuugCC-GCCGCCGGUGacgaucGCGg -3'
miRNA:   3'- cUGCUGua-GGaCGGCGGUCAUaa----CGC- -5'
24313 5' -54 NC_005263.2 + 14160 0.68 0.59608
Target:  5'- uGGCGACuucgggCCgGCgGCCGGUGUgcGCGa -3'
miRNA:   3'- -CUGCUGua----GGaCGgCGGUCAUAa-CGC- -5'
24313 5' -54 NC_005263.2 + 41251 0.69 0.540555
Target:  5'- cGCGAgGgcuaCCUGUCGCCGGUcgUGUc -3'
miRNA:   3'- cUGCUgUa---GGACGGCGGUCAuaACGc -5'
24313 5' -54 NC_005263.2 + 28984 0.69 0.529642
Target:  5'- gGGCG-CAUgCUGCUGCCAG-AUcGCGa -3'
miRNA:   3'- -CUGCuGUAgGACGGCGGUCaUAaCGC- -5'
24313 5' -54 NC_005263.2 + 9998 0.69 0.529642
Target:  5'- -uCGcCGUCUUGCgCGCCAGg--UGCGg -3'
miRNA:   3'- cuGCuGUAGGACG-GCGGUCauaACGC- -5'
24313 5' -54 NC_005263.2 + 24463 0.7 0.517732
Target:  5'- cGACGACGUUCggguucgUGCCGCCGuucaUcgUGCGg -3'
miRNA:   3'- -CUGCUGUAGG-------ACGGCGGUc---AuaACGC- -5'
24313 5' -54 NC_005263.2 + 1081 0.7 0.49742
Target:  5'- aGCGACGUCCauuacgUGCCGCaGGUucauGUUGCa -3'
miRNA:   3'- cUGCUGUAGG------ACGGCGgUCA----UAACGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.