Results 21 - 29 of 29 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 24313 | 5' | -54 | NC_005263.2 | + | 4331 | 0.67 | 0.663635 |
|
Target: 5'- aACGGCccgauaaguuuAUCgaGCCGUUAGUGUUGUGu -3' miRNA: 3'- cUGCUG-----------UAGgaCGGCGGUCAUAACGC- -5' |
|||||||
| 24313 | 5' | -54 | NC_005263.2 | + | 45436 | 0.67 | 0.674851 |
|
Target: 5'- cGCGACA-CUgcagGCUGCCGGUGUcGCc -3' miRNA: 3'- cUGCUGUaGGa---CGGCGGUCAUAaCGc -5' |
|||||||
| 24313 | 5' | -54 | NC_005263.2 | + | 34347 | 0.67 | 0.674851 |
|
Target: 5'- aGCGACGcgCCUGUCGCCGuGUAaaccgGCa -3' miRNA: 3'- cUGCUGUa-GGACGGCGGU-CAUaa---CGc -5' |
|||||||
| 24313 | 5' | -54 | NC_005263.2 | + | 29514 | 0.67 | 0.686023 |
|
Target: 5'- uGCGGCGUCCgucgGCgCGCCAGcagugGCc -3' miRNA: 3'- cUGCUGUAGGa---CG-GCGGUCauaa-CGc -5' |
|||||||
| 24313 | 5' | -54 | NC_005263.2 | + | 14996 | 0.67 | 0.686023 |
|
Target: 5'- -gUGACGUUCUGCuCGCCGGcUAUcGCc -3' miRNA: 3'- cuGCUGUAGGACG-GCGGUC-AUAaCGc -5' |
|||||||
| 24313 | 5' | -54 | NC_005263.2 | + | 44688 | 0.67 | 0.697142 |
|
Target: 5'- cGGCGGcCAUCCUGCgCGCaCAcGUcg-GCGg -3' miRNA: 3'- -CUGCU-GUAGGACG-GCG-GU-CAuaaCGC- -5' |
|||||||
| 24313 | 5' | -54 | NC_005263.2 | + | 21246 | 0.66 | 0.730053 |
|
Target: 5'- cGACGGCGcggUGCgCGCCAcGUAUUGCc -3' miRNA: 3'- -CUGCUGUaggACG-GCGGU-CAUAACGc -5' |
|||||||
| 24313 | 5' | -54 | NC_005263.2 | + | 24783 | 0.66 | 0.740835 |
|
Target: 5'- gGGCGGCGUCggcgGCuCGCCGGgcgucgGCGg -3' miRNA: 3'- -CUGCUGUAGga--CG-GCGGUCauaa--CGC- -5' |
|||||||
| 24313 | 5' | -54 | NC_005263.2 | + | 33950 | 0.66 | 0.7515 |
|
Target: 5'- cGGCGACAaCUgcggGCCGgCgAGUGUgcgGCGa -3' miRNA: 3'- -CUGCUGUaGGa---CGGC-GgUCAUAa--CGC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home